Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00730 ATGAAAATTGAGGAACCAAAGCAAGAAAACCTCAACCTTTCTTCTTGTGAGAGCTTAGGGATTGTGTGCCTTTCCATGGAAATTCAGTTCCACAATCCAAAGCAGCACTTGAGATCAAAAGGGGGGAAAAAGAAAGGGAGAAACAACAAAAGCAAGAACAAGTATGTTGGGGTGAGGCAAAGGGCATCAGGGAAATGGGTTGCTGAAATCAAAGAAACAACACAAAAGATAAGAATGTGGCTTGGCACATATGAGACAGCAGAGGAAGCAGCTAGGGCTTATGATGAAGCAGCATGCCTCCTTCGTGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCATTTGATTCCCCTCTTGCTTCACGGATTCAGAGTCTTCTCAATAACAGAAAAGGCACCAAAGAACAAGAACAAGACGTGGGAACATGGGTCAACACCAACCAACAGGAGTTGAGTCTAACTGAAGGAGTTAGTACCCCTCAACATCAGGAACTAAGGTTCGAATCTTCGCCACAAGATCTGTCTATGTTTAGCGTTCAACCGTGTCTCGAACAAGATTGTTGTCAAAGGAAGATATGTGTGAGAGATCAGAAGAAAAAAAGGGTTACCAGCACCACTAGCAATAGTACTATCACAAGCAACAGTGACAGATGTGAGAACTCACTTTCTAGTGAGACAACAACCCAAAACACACCACTACTTGATGATGCTTATAGGCCTGATTTGAGCAATTTCATGGGGTCTGAGTCGGATTCTCAGGACAATCCTTCATCGGGTTGTGAATCTTTTTGTGGTCATCATTTTCCCTTTGGCCAAGTAATGGATATGGCAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGAGTTTGAAAGTATGAAGGTTGAAAGGCAAATTTCAGCTTCACTTTATGCAATGAATGGTGTGCAGGAGTACATGGACACTGTTCAAGACTCCAACAGTGAAGCTATGTGGAATCTTCCACCCTTGTGCTCATTTTTGCGTTAA 1011 0.4342 MKIEEPKQENLNLSSCESLGIVCLSMEIQFHNPKQHLRSKGGKKKGRNNKSKNKYVGVRQRASGKWVAEIKETTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSFDSPLASRIQSLLNNRKGTKEQEQDVGTWVNTNQQELSLTEGVSTPQHQELRFESSPQDLSMFSVQPCLEQDCCQRKICVRDQKKKRVTSTTSNSTITSNSDRCENSLSSETTTQNTPLLDDAYRPDLSNFMGSESDSQDNPSSGCESFCGHHFPFGQVMDMANLPDIAGLELPEFESMKVERQISASLYAMNGVQEYMDTVQDSNSEAMWNLPPLCSFLR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00730 336 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Spst4g00730 336 MobiDBLite consensus disorder prediction 36 54 - -
Spst4g00730 336 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 45 300 - -
Spst4g00730 336 MobiDBLite consensus disorder prediction 204 259 - -
Spst4g00730 336 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Spst4g00730 336 CDD AP2 54 110 IPR001471 GO:0003700|GO:0006355
Spst4g00730 336 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Spst4g00730 336 SUPERFAMILY DNA-binding domain 54 111 IPR016177 GO:0003677
Spst4g00730 336 MobiDBLite consensus disorder prediction 204 235 - -
Spst4g00730 336 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Spst4g00730 336 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Spst4g00730 336 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Spst4g00730 336 MobiDBLite consensus disorder prediction 34 54 - -
Spst4g00730 336 FunFam ethylene-responsive transcription factor RAP2-11 53 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00730 Spst-Chr4 30950166 30951176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00730 35 129 AP2-EREBP Transcription Factor Family AT5G19790 65.263 8.47e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g00730 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00730 K09286 - gmx:100792432 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03729 1 47126277 47127054 Spst4g00730 4 30950166 30951176 PCT