Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00691 ATGGAGGACATTGATTGTAGCAGCTTCTTCGACCACATCGACGACCTCCTCGAATTCCCCGAAGAAATGATGACTGCCGACACCACCATTACAGCGCCGGTTGCTGCTCCTCCAACGAGCTTCTGGTCCACCCAGTCCCACTCGCTCCCCACCACCAACATGGTTTTCTCCGACAACGCACCGGATCTATCAGCAGAGTTCTCTGTTCCGGTGAGATTTCAAATTCTTCTGACATCTCATTCATCCACTTGTGCACTGACAACGCGGTCACTTGGATTACCTGAACCGGTTGCGTGTAGTTTTATCATCGCTCCTGGTTTTGCAGTTCATGCCTCACGAGGAAATGTGGTTTCATCAAAATTTGTTAACTGCATCAAAAGATATGAAGACATTGTACAATTGGAATGGCTGTCAAATTTTGTTGAAGACTCTTTCTCTGATGGAACTCTCACCATGCAGCAAGAGGGGTCACAATGCACCACCAAGGAGGAAATAACTCATGCTCAATTTCAGACAGCAAGCCCAGTCTCAGTCCTTGAAAGCAGCAGTTTCTGCTCCAAGGAAAAGGCTGCACCTCGTACCCCCGAGATTTACATTCCTGTGCCGTGTGGGCGAGCGCGCAGCAAGCGTGCTCGCCCTGCTGCCTTCAATCCCCATCCAGTGATGCAGCTCATCTCCCCGGCATCCTCCACCGGCGAGAACACGCATCACAATGCCACCTCCTCCAAGACCCCAGACTCTGAGAATTTCGCTGAGTCCATGATCAAGAAGCCCAAGCAGGCTTCTAGTGAGCACAAGAAGAAAAGGAAGATCAAGGTGACTTTCTCAGCAGGTCAAGATCACAATGCTGCACCATCACAGGCACTGAGGAAATGTTTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCGGGGCGGCTCTTCCCGGAATACCGGCCGGCCGCCAGTCCAACGTTCTGTGCAGCCTTGCACTCTAACTCCCACAAGAAGGTCCTTGAAATGAGAAACATGACAGGCACCAAATCTGATTTTGCAGCAGATTCAGCTGCCTCACCAGAACTTATTCCAAACACTAACAGCAGTCTTTCCCTGGAATACATGTGA 1161 0.5082 MEDIDCSSFFDHIDDLLEFPEEMMTADTTITAPVAAPPTSFWSTQSHSLPTTNMVFSDNAPDLSAEFSVPVRFQILLTSHSSTCALTTRSLGLPEPVACSFIIAPGFAVHASRGNVVSSKFVNCIKRYEDIVQLEWLSNFVEDSFSDGTLTMQQEGSQCTTKEEITHAQFQTASPVSVLESSSFCSKEKAAPRTPEIYIPVPCGRARSKRARPAAFNPHPVMQLISPASSTGENTHHNATSSKTPDSENFAESMIKKPKQASSEHKKKRKIKVTFSAGQDHNAAPSQALRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAALHSNSHKKVLEMRNMTGTKSDFAADSAASPELIPNTNSSLSLEYM 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00691 386 CDD ZnF_GATA 291 338 IPR000679 GO:0006355|GO:0043565
Spst4g00691 386 Gene3D - 286 336 IPR013088 GO:0006355|GO:0008270
Spst4g00691 386 ProSitePatterns GATA-type zinc finger domain. 292 317 IPR000679 GO:0006355|GO:0043565
Spst4g00691 386 ProSiteProfiles GATA-type zinc finger domain profile. 286 322 IPR000679 GO:0006355|GO:0043565
Spst4g00691 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 290 349 - -
Spst4g00691 386 MobiDBLite consensus disorder prediction 226 249 - -
Spst4g00691 386 FunFam GATA transcription factor 281 367 - -
Spst4g00691 386 PANTHER GATA TRANSCRIPTION FACTOR 12 369 - -
Spst4g00691 386 Pfam GATA zinc finger 292 325 IPR000679 GO:0006355|GO:0043565
Spst4g00691 386 PIRSF Txn_fac_GATA_plant 109 381 IPR016679 GO:0003677|GO:0005634|GO:0045893
Spst4g00691 386 PIRSF Txn_fac_GATA_plant 1 72 IPR016679 GO:0003677|GO:0005634|GO:0045893
Spst4g00691 386 SMART GATA_3 286 336 IPR000679 GO:0006355|GO:0043565
Spst4g00691 386 MobiDBLite consensus disorder prediction 226 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00691 Spst-Chr4 24286911 24290117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00691 129 354 C2C2-Gata Transcription Factor Family AT4G32890 41.494 2.89e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst4g00691 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00691 - - gmx:100783228 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00691 4 24286911 24290117 Spst10g00672 10 6933837 6935755 PCT