Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00665 ATGGATGCAAATGGGAGGCTACGTGCTAACACCTGGGCAAGGTCTTCATCCTTAACCTCTCCTGCAAGTGGTTTAGCCTCGGATCCTCTGTCTTTCCCAGGTTTTGGTTTGCAGAATAATCAACCCAAATGGGATGATCCCTCAAATTCAGATTATGGGATCAGGGCAGAAGTACCTTTCAAAGAATTCAACCAACCTTCTCAAACTCAGTCTCCGCTTCCTTGCAACTCAAACAATGAGATTGAGATCCCTGATCAAGAAAACTGTCATCTGAATGAATCATCACAAACCAGTACACTCCAAGATTGGGAACCCAATGTGATTTTGAATAACCTGTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGTTAGTCAAAAGGGCGTTGGACAACCTAATGAACTTGTTACTCAAGAACAACAGCTCATCACAACTGATCTTACATCAATCATTATTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGGCATAACCTTGCAAATGCAAGTTCATTGATTGGACAGATTGACCAGCTTCGTGGGGCGACGGTTCCTTCTGGAACTGGTGGAAGTGGCAGCTTTATCCAACCACAAAATAATGGTGAAAAAAAAAAGTCTGATCAGTCCATGCAGACTGATCTACCTAATAATGGTGAAATGGAGCCAAACTACAATATGGTAGAACAAGAACTCAAAGATGAAGAAGATGTAGATGATGGAGAAAACCTTGCCCCTGGTTCGTATGAGATTCTACAACTAGAGAAAGAAGAAATCCTTGCTCCTCATACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGACGAGTACAAAACCCCAGCAGCGCTTGCAAAACCGCACAAAGAATCCGGGTCACCAAAGCTTATCAAGAGGTATTCCTGTCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAACCTCTGAAAACTATCCTGTGTGTCAAAAACCATTACAAAAGGACGCATTGTGACAAGAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTGAAAACTCATGAAAAACATTGTGGTAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCTAGAAAAGACAAGCTTTTTGGTCACATTGCTCTTTTCCAAGGCCATACTCCAGCCATTCCCTTGGATGACACTAAAGGGGTAGTTGAGGCACCCAATCATGACAGCAAAGAAAGCAGTAAGGTGGGGAATATGAACTTCACTTTTGGATCAACTCCTTCAAATGGAAATGATGTTGAAAATGTCATGGATGTTAAAGGCAATAGTGATGATCCTATCAGTTTTTTCTCATCATTGAACTTTGACACCAGCTTTGGTGGGTTTAATGAATTCACCAGACCTCTATTTGATGACTCAGAAGGCCCATTCTCTTTTGTCATGCCTGGATCTTTCAAATCTGGAGGAGAATCAAGTCCTGACAATCTTTTGTAA 1557 0.4226 MDANGRLRANTWARSSSLTSPASGLASDPLSFPGFGLQNNQPKWDDPSNSDYGIRAEVPFKEFNQPSQTQSPLPCNSNNEIEIPDQENCHLNESSQTSTLQDWEPNVILNNLSFLEEKIHQLQDLVHLIVSQKGVGQPNELVTQEQQLITTDLTSIIIQLISTAGSLLPSVRHNLANASSLIGQIDQLRGATVPSGTGGSGSFIQPQNNGEKKKSDQSMQTDLPNNGEMEPNYNMVEQELKDEEDVDDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVVEAPNHDSKESSKVGNMNFTFGSTPSNGNDVENVMDVKGNSDDPISFFSSLNFDTSFGGFNEFTRPLFDDSEGPFSFVMPGSFKSGGESSPDNLL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00665 518 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Spst4g00665 518 MobiDBLite consensus disorder prediction 33 47 - -
Spst4g00665 518 SUPERFAMILY beta-beta-alpha zinc fingers 271 298 IPR036236 -
Spst4g00665 518 MobiDBLite consensus disorder prediction 1 48 - -
Spst4g00665 518 SMART c2h2final6 273 295 IPR013087 -
Spst4g00665 518 SMART c2h2final6 321 354 IPR013087 -
Spst4g00665 518 SMART c2h2final6 359 381 IPR013087 -
Spst4g00665 518 MobiDBLite consensus disorder prediction 9 26 - -
Spst4g00665 518 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 87 493 IPR044300 GO:0010044|GO:0010447
Spst4g00665 518 MobiDBLite consensus disorder prediction 192 232 - -
Spst4g00665 518 Gene3D Classic Zinc Finger 257 323 - -
Spst4g00665 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00665 Spst-Chr4 18660270 18661826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00665 240 518 C2H2 Transcription Factor Family AT1G34370 68.814 6.68e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g00665 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00665 - - gmx:100500526 949.118