Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00656 ATGGGCAGGTATGAGTACCCTTCCACATCTTTCCTTAATGTTGTTTTGTTTCTCCTTTGTTTCTGCCCCATGGTGTTGTCCCTGCTATCACAAAACCAAACAGAAACCATGAACAACATCTTAAAGAATCTCACTCCTACTATTTCATGGAGTGGCTCAGACCCATGTGCATGGAAGGGAGTGAGTTGTGACCCTATCAATTCCTATGTAGTAGGGATATCTTTATCTGCGTTCTCACTCTCTTCTTCTGACTTTTTGCCTCTTGTTTGCAAAATTGAAACTTTGGAGCATCTTGATGTCTCCAACAACCATCTGAACTCAATCCCTGATGGATTCATCACTGAGTGTGGAAAGATTAAGGGGTTGAAGTTGTTGAATTTCAGTACTAACAAATTAGGAGGTGTTTTACCTACTTTTCATGGTTTTGAAGCATTGGAATCCCTGGATATGTCTTTCAATATGTTGAGAGGAAATATTGGATTCGAGTTAGATGGGTTGGTTAGCCTCAAAAGTTTGAATCTTACTTTCAATAAATTCACTGGGTCTCTTCCAACCAATTTGGGAAAGTCCATGGTTTTAGAGAATCTTCTGCTTTCTAACAATCGCTTTGATGGCGAAATCCCTGATGAATTATTGAGTTATGAAAATTTGACTTGGATTGATCTTAAGGCCAATAATCTTTCACGGTCTATTCCTATCAATATTGGGAAGCTTTCTAAATTGGAAACCTTGATCCTTTCCGCTAATAACCTCATTGGTGAAATTCCAACTTCCCTAACGAGCATCACCAAACTTTCAAGATTTGCAGCAAATTATAACAATTTCACAGGTACTATACCACCAGGAATTACAAAATATCTCACCAGTTTGGATCTTAGTTTTAATAATCTGTATGGAACTATTCCGGGAGATCTTTTGTCTCCACCACAGTTGCAGGTTGTAGATTTGTCCAATAATATGCTAAACGGATCATTACCTTCGAAATTTTCTTCAAAGTTGTTCAGGTTGAGGTTGGGGAGCAATCAACTGAATGGAAACATTCCTTCAGATGCTTTTGTAGAAGGTCATAATTTGACATACTTGGAGCTGGATAACAATAGCTTTACGGGATCAATACCAGCTGAGTTGGGTTCTTGCAGGAATTTGGCATTGTTGAATTTAGCTCAGAACCAGTTGAGTGGTGTATTGCCACAACAACTTGGTAATCTTGAGAATCTTCAAGTCTTGAAGCTTCAATTAAACAAGCTTAATAGTACAATACCAACTCAAATTGGTCAACTTCAAAAGCTGTTAACCCTGAACTTGGGCAGGAATTCTCTGGGTGGATCAATTCCATCTGAGATTACACGTTTAAGCGCTCTTAACTTCTTGTACTTGCATAGCAACAATCTTAGTGGTTCCATACCGACAACCATTGACAACTTGAGTGTTCTTTTTGAACTCCAACTTGGGGAAAACCACCTAAGAGGTGTGATTCCAAATATGCCATTGAGTCTTCAGGTTTCACTGAATCTTAGTAGCAACATCTTTAGTGGCTCTATTCCTAGCAGTTTCGGTAGTTTGAAAAACCTGGAAATCTTGGATCTCTCAAATAACAACTTTTCTGGTCAAATTCCCGATGATCTGACTAAAATGATATCTTTGACACAGTTGTTACTTTCTAACAATCCTCTGTCCGGTGAAATTCCAAAATTCACTCAAAAAATTTATGTTGAATACGTTGGAACTAATCTGAAAAATAATACTGCACAGGGCAACCCAACAGCCGACACTGTCTCGAAGAAGGGAATATCCGTTGCAGTAGCCATTCTCATTGCAATTGTTGCGGCTATTTTTCTTGTTGGGCTTGTCACTCTGGTGGTGTTGTCATTTTCGCGCCACTATTACAGGGTTAATGACGAGCATTCACAGTCCAGAGAAGATCATCAGCAAAGTCCGCTAATCCAAAGTAATTTGTTAACTCCTAATGGAATACATAGATCAAACATTGTCTTCTCCAAAGCCATGGAAGCTGTTGCTGAAACATCAAATATTACTCTTAAAACAAGGTTTTCAACTTATTATATGGCTGTCATGCCGTCTGGTTCAATCTATTTTGTCAAGAAACTGAACTGGTCTGACAAGATATTGCCAGTGGGAAATCATGACAAATTTGGGAAAGAGCTTGAAGTCTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTGGCCTATGTTCTGTCTACTGATACTGCTTATTTACTATACGAGTTTATCTCAAATGGCTCCCTCTTTGATGTTCTTCATGGAAGCATGTGTTTGTCTTTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGAGTGGCTCAAGGACTCTCTTTTCTTCATGGATTCGCCTCTAGTCCAATACTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAGGTGATTGATCCCTCAAAGAGTACAGGAAACTTATCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTCTACAGCTTTGGTGTGATTCTGCTTGAACTGCTGACAGGAAAACCTGCGGTCACCGAGGGAACAGAATTGGTCAAGTGGGTTTTGCGTAATTCAACAAACCAAGATTACATTCTTGACTCTAACGTCAGTAAAACATCACAAGCAGTCAGAAATCAGATGCTTGCAATTCTTGAGATTGCTCGTGTTTGTGTTAGTACATCCCCAGAATTAAGACCAAAGATGAAGAGTGTGCTAAGGATGCTCTTAAATGCTAGATAA 2841 0.3928 MGRYEYPSTSFLNVVLFLLCFCPMVLSLLSQNQTETMNNILKNLTPTISWSGSDPCAWKGVSCDPINSYVVGISLSAFSLSSSDFLPLVCKIETLEHLDVSNNHLNSIPDGFITECGKIKGLKLLNFSTNKLGGVLPTFHGFEALESLDMSFNMLRGNIGFELDGLVSLKSLNLTFNKFTGSLPTNLGKSMVLENLLLSNNRFDGEIPDELLSYENLTWIDLKANNLSRSIPINIGKLSKLETLILSANNLIGEIPTSLTSITKLSRFAANYNNFTGTIPPGITKYLTSLDLSFNNLYGTIPGDLLSPPQLQVVDLSNNMLNGSLPSKFSSKLFRLRLGSNQLNGNIPSDAFVEGHNLTYLELDNNSFTGSIPAELGSCRNLALLNLAQNQLSGVLPQQLGNLENLQVLKLQLNKLNSTIPTQIGQLQKLLTLNLGRNSLGGSIPSEITRLSALNFLYLHSNNLSGSIPTTIDNLSVLFELQLGENHLRGVIPNMPLSLQVSLNLSSNIFSGSIPSSFGSLKNLEILDLSNNNFSGQIPDDLTKMISLTQLLLSNNPLSGEIPKFTQKIYVEYVGTNLKNNTAQGNPTADTVSKKGISVAVAILIAIVAAIFLVGLVTLVVLSFSRHYYRVNDEHSQSREDHQQSPLIQSNLLTPNGIHRSNIVFSKAMEAVAETSNITLKTRFSTYYMAVMPSGSIYFVKKLNWSDKILPVGNHDKFGKELEVLAKLNNSNVMTPLAYVLSTDTAYLLYEFISNGSLFDVLHGSMCLSLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNLSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSTNQDYILDSNVSKTSQAVRNQMLAILEIARVCVSTSPELRPKMKSVLRMLLNAR 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00656 946 Gene3D Ribonuclease Inhibitor 188 284 IPR032675 -
Spst4g00656 946 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 753 946 - -
Spst4g00656 946 Gene3D Ribonuclease Inhibitor 285 590 IPR032675 -
Spst4g00656 946 SMART LRR_typ_2 92 115 IPR003591 -
Spst4g00656 946 SMART LRR_typ_2 475 498 IPR003591 -
Spst4g00656 946 SMART LRR_typ_2 403 427 IPR003591 -
Spst4g00656 946 SMART LRR_typ_2 451 474 IPR003591 -
Spst4g00656 946 SMART LRR_typ_2 238 262 IPR003591 -
Spst4g00656 946 SMART LRR_typ_2 521 545 IPR003591 -
Spst4g00656 946 SMART LRR_typ_2 166 190 IPR003591 -
Spst4g00656 946 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 232 325 - -
Spst4g00656 946 SUPERFAMILY RNI-like 249 564 - -
Spst4g00656 946 SMART serkin_6 677 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00656 946 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 31 186 - -
Spst4g00656 946 ProSiteProfiles Protein kinase domain profile. 673 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00656 946 Pfam Protein kinase domain 684 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00656 946 PRINTS Leucine-rich repeat signature 521 534 - -
Spst4g00656 946 PRINTS Leucine-rich repeat signature 287 300 - -
Spst4g00656 946 Pfam Leucine rich repeat 502 558 IPR001611 GO:0005515
Spst4g00656 946 Pfam Leucine rich repeat 94 155 IPR001611 GO:0005515
Spst4g00656 946 Pfam Leucine rich repeat N-terminal domain 38 64 IPR013210 -
Spst4g00656 946 SUPERFAMILY L domain-like 39 328 - -
Spst4g00656 946 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Spst4g00656 946 Gene3D Transferase(Phosphotransferase) domain 1 753 946 - -
Spst4g00656 946 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 215 942 - -
Spst4g00656 946 Gene3D Phosphorylase Kinase; domain 1 649 752 - -
Spst4g00656 946 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 327 589 - -
Spst4g00656 946 SUPERFAMILY Protein kinase-like (PK-like) 684 942 IPR011009 -
Spst4g00656 946 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 641 752 - -
Spst4g00656 946 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00656 Spst-Chr4 17882665 17886131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00656 145 946 Receptor kinase-like Gene Family AT2G41820 37.964 1.80e-144 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst4g00656 Pkinase 6.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00656 - - gmx:100796647 1366.29