Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00648 ATGGCCGAGTCACGACCTCGAAATGGTGGCAGTGGTGATGACAATGGTGCATCTGGAAGCAGACGCAGAGGCACTGTTTTGAGACGAGCCATGGCATCGCAAACACGAGATGAAGCAATGGTGGCATCTACACCTGCAACGCCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAATGCATTGGGGGGTGCATCTTTGCACCCCACTTTGGCACTGACCAAGGTGCGGCCAAGTTTGCAGCTGTGCACAAGGTGTTTGGGGCTAGCAATGTGTCAAAGCTCTTGTCCAACATTCCGGCGAACCGCCGCAATGAAGCGGCGACGACCATTTCCTATGAGGCTCAGGCGAGGCTGTCTGATCCGGTCTATGGTTGTGTCTCCACCATCCTTGCTCTGCAACAACAGGTGGCATCTTCTGAAGCAGAGCTAGCTATGTTGCAAACTCAGCTGATGAATAGTAGGTTTGCTTATGCAAGTGCACTTCAGACCACACAACTACAGCAACCAGCAGCACTACAACCAGCATATTCCAACAACTCATGTGCTTCCACCAACCTTATGAACATGAGAAGCTACAACAATAACCCTGCTGGCTTTGACCTTGCAATGGACACAGCACCCTCATCAAACACTTTGGAGCCTCTTCAACTCACAAGGCTGTCCACATATGAGGAAGAGGATGAAGAAGAAAGCAGGACTCGGCAAGCCTTCAAACACCATTGA 720 0.5097 MAESRPRNGGSGDDNGASGSRRRGTVLRRAMASQTRDEAMVASTPATPCGACKFLRRKCIGGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPANRRNEAATTISYEAQARLSDPVYGCVSTILALQQQVASSEAELAMLQTQLMNSRFAYASALQTTQLQQPAALQPAYSNNSCASTNLMNMRSYNNNPAGFDLAMDTAPSSNTLEPLQLTRLSTYEEEDEEESRTRQAFKHH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00648 239 Pfam Lateral organ boundaries (LOB) domain 48 146 IPR004883 -
Spst4g00648 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 46 225 - -
Spst4g00648 239 MobiDBLite consensus disorder prediction 203 239 - -
Spst4g00648 239 Coils Coil 128 148 - -
Spst4g00648 239 MobiDBLite consensus disorder prediction 203 217 - -
Spst4g00648 239 ProSiteProfiles LOB domain profile. 47 149 IPR004883 -
Spst4g00648 239 MobiDBLite consensus disorder prediction 219 239 - -
Spst4g00648 239 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00648 Spst-Chr4 16104108 16106554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00648 47 230 AS2 family AT3G03760 59.898 1.04e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst4g00648 LOB 5.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00648 - - gmx:100813769 357.066