Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00646 ATGGGACTGAATTTACCTCTCAAAATCTTGAGAGCACCCATTGCTGCAATGGGAATGGCATTACCCTTCTTTGCAACTGGTGGCATCAAGCCTGAAACTGATTCTTCATTTGCATTCCTTTTGGTGAGCATCATCTCTCTTATGCTGTGTGAACTCTTGACAACCAAGGAAGCCCAGAGGAGACATCAATACTATGATGAACTGGCTTCGCAGGGTCGTTTCTCTTCTGCTCTTTTAGTTGTAAGGGAACATCTTCCTTCTGGAAAGGCATGTCTGAGATTGAATATCGATGCGACAAGAATAGGAAACATTGCACGGTTTGTGAATCATTCATGTGACGGTGGTAATTTGAGCACAAAGCTAGTTAGAATTTCAGGATCTTTGTTCCCCCGCCTATGCTTCTTTGCTTCAAAAGATATCCAAGTAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCAAATGGTTTGCCATGCTTTTGCAATAGCCCTTCTTGCCTTGGAACATTGCCCTCTGAGGACACGTGA 537 0.432 MGLNLPLKILRAPIAAMGMALPFFATGGIKPETDSSFAFLLVSIISLMLCELLTTKEAQRRHQYYDELASQGRFSSALLVVREHLPSGKACLRLNIDATRIGNIARFVNHSCDGGNLSTKLVRISGSLFPRLCFFASKDIQVDEELTFSYGEIRKRPNGLPCFCNSPSCLGTLPSEDT 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00646 178 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 48 173 - -
Spst4g00646 178 ProSiteProfiles Post-SET domain profile. 158 174 IPR003616 -
Spst4g00646 178 SMART set_7 7 157 IPR001214 GO:0005515
Spst4g00646 178 Gene3D SET domain 5 178 IPR046341 -
Spst4g00646 178 SUPERFAMILY SET domain 48 171 IPR046341 -
Spst4g00646 178 ProSiteProfiles SET domain profile. 5 151 IPR001214 GO:0005515
Spst4g00646 178 Pfam SET domain 90 151 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00646 Spst-Chr4 16068563 16071125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00646 92 173 C2H2 Transcription Factor Family AT2G23740 38.202 1.78e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst4g00646 SET 8.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00646 K11433 - gmx:100786871 248.825