Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00644 ATGAATGTTATTGATCGATGTTGGAGACCAAATCTAGAATGGAGGAAACATCGATCCCAATTAGCAACATGTTCAGTGGGCTATGCCGGCAAGATGTTAAATAACATTGGTAACGACCTTATTTATTATAAAGTTACTGACTCTAGTGATGATCCTATAAACCCAAAACCCAACACCTTGAGGTATGGAGCCTCTATGATTCCAAGTAAAGTGTGGATCACATTTGAGAAGGACATGGACATCAAACTAGAGAAACCCCTTCTTATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTCCATATAGCTAATAATGCATGCCTAATGATTTTTAAGGCCACCAACATAATTATACATGGCATCCGAATTCACCATTGCAAACCTCAAGCCCCTGGGATGGTAATGGGGCATGAGGGAAAGGTGATTCCTCTAGGCCATGTAGATGGGGATGCAATTAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGATGTAACTCGAGGTTCCACTAATTTGACTATATCTAATAATTGGTTCAAAAATCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATACGTGAGAGATCAAAACATGAAGGTTACCGTCTTGTACAACCATTTTGGACCAAATTGCAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATCTTTATCAGGGATGGCTCCAATATGCCATTGGTGGAAGCATGGACCCTAGTCTTAAAAGTGAATCTAACCTCTTCATAGCACCAACATCAAGGAATAAGGAGGTAACTTGGAGGAGAAATAGTTCTAATAATGGAGACACATGGGAATTTCATTCGGTGAGAGATATTTTTGAAAATGGAGCGTCTTTTACTACAACAAAAGGAGGACGTGTGCCAAAACCGAATTATAATAATGAACAAAGATTTAAAGTTGTTGATGCCAAATTTGTGAAATCATTGACACGTTCATCAGGAGTGTTACCAACTATGTAA 1044 0.3851 MNVIDRCWRPNLEWRKHRSQLATCSVGYAGKMLNNIGNDLIYYKVTDSSDDPINPKPNTLRYGASMIPSKVWITFEKDMDIKLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRIHHCKPQAPGMVMGHEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTNLTISNNWFKNQDKVMLLGHDDGYVRDQNMKVTVLYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMDPSLKSESNLFIAPTSRNKEVTWRRNSSNNGDTWEFHSVRDIFENGASFTTTKGGRVPKPNYNNEQRFKVVDAKFVKSLTRSSGVLPTM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00644 347 Pfam Pectate lyase 86 269 IPR002022 -
Spst4g00644 347 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Spst4g00644 347 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Spst4g00644 347 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Spst4g00644 347 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Spst4g00644 347 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Spst4g00644 347 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Spst4g00644 347 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Spst4g00644 347 Gene3D - 1 345 IPR012334 -
Spst4g00644 347 SMART amb_all 78 275 IPR002022 -
Spst4g00644 347 PANTHER PECTATE LYASE 18-RELATED 1 345 IPR045032 GO:0030570
Spst4g00644 347 SUPERFAMILY Pectin lyase-like 25 312 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00644 Spst-Chr4 15760311 15761664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00644 32 279 Polysaccharide Lyase AT5G09280 70.565 8.97e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00644 K01728 - gmx:100780437 627.091