Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00616 ATGGCAAACCTTGAAGGCTTTGTTGAGAAAGGGGGCATAAAATTGCCGATTGGGTTCCGGTTTTGTCCAACTGATGAGGAGCTTCTCTTTTACTACCTCAAGAAGAAGGTTTTTGCTCAGCAATTGCCTGCTTCAGTCGTTTCAGAGTGTGATGTGTTTCAGACTCAGCCATGGCGGCTTCCAGGTGATTTGAGGGAAAAGAGGTACTTTTTTAGCAATTGTGGAATCATGAACAAGGGAGATACTGGCTCTGGTTGTTGGAAATGTGTTGGAAAAGAAAAACAAATAATGCTTTGTGAAAGTAACAAAGTGATTGGAATGAAGAAAACACTGGTTTTTTGCAAAGGGTCCCATCACACGAGAACTCGTTGGGTCATGCACCAATTGCGTCTTGTAACTCACTACCCACGCCAGATGCCAGTGTCAGATTTTGCTGTATATGTGATATTTCAGAAAAAGAAGACAAAAACATCTCATGAGAAACCCTCCAGGAGCAGCAAAGTTGATGATGTCAAAGCTACTATCATGGATTTTACAGTGGAATTTGGTGATGATAACATAGGGTTTCCCCCTCCTTCTTCCCCATGCTTAAGTGAAGATTGTAGTGAATCTCTCACAAGTTAA 624 0.4183 MANLEGFVEKGGIKLPIGFRFCPTDEELLFYYLKKKVFAQQLPASVVSECDVFQTQPWRLPGDLREKRYFFSNCGIMNKGDTGSGCWKCVGKEKQIMLCESNKVIGMKKTLVFCKGSHHTRTRWVMHQLRLVTHYPRQMPVSDFAVYVIFQKKKTKTSHEKPSRSSKVDDVKATIMDFTVEFGDDNIGFPPPSSPCLSEDCSESLTS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00616 207 SUPERFAMILY NAC domain 11 152 IPR036093 GO:0003677|GO:0006355
Spst4g00616 207 Gene3D NAC domain 24 157 IPR036093 GO:0003677|GO:0006355
Spst4g00616 207 Pfam No apical meristem (NAM) protein 16 131 IPR003441 GO:0003677|GO:0006355
Spst4g00616 207 ProSiteProfiles NAC domain profile. 15 152 IPR003441 GO:0003677|GO:0006355
Spst4g00616 207 PANTHER NAC TRANSCRIPTION FACTOR 56 15 163 - -
Spst4g00616 207 MobiDBLite consensus disorder prediction 184 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00616 Spst-Chr4 13949730 13951936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00616 1 155 NAC Transcription Factor Family AT5G13180 44.512 4.37e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g00616 NAM 8.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00616 - - gmx:100815663 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00312 1 4334463 4335843 Spst4g00616 4 13949730 13951936 PCT