Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00601 ATGGCTAATTGGAAGAAGTTGGAAATTATAGGAAACGGTTCATATGCTACCGTTTATCTAGCTGCTGTCATGTTTCCGCAGGAAGAGTCAAATTGGAAGGTTACAGCTGTGAAGAGTTCGAGGCCTTTTCCTTACTCATTTGCTTCTTTGCGAAAGGAGAAAAAAATATTGGAATTATTTATAGGTTGTAAAGAAATCCTTCAATGTTTTTTTTATACTTATACTATAGAGAGAGGTTTTTCTATCTACAATCTCTTTATGGAGTTTGCTCCTTATGGGTCTCTTGCTGATTTAATAAGGAAGGGACCACTCCCAGAGAAGGAAGTAATATTGTGTACTCACATGCTTCTGAAGGGACTTTCTTGTATTCATGGAAAAGGAATTGTCCATTGTGATCTTAAACCGGACAACATTCTTCTCTTTCCTTCCTCAGAAGATCCTACAAAATTTCAACTAAAGATTTCTGATTTTGGATTATCCAAGATTAGAGGAGAGAGAAATGCTGACTTTGGACAGATCAAGTTTAGAGGGACACCATTTTACATGTCACCAGAGTCTCTTGTAGGTTTGTTGGAAGCATCCTTAGATATATGGTCTCTTGGATGCATTGTTATTGAAATGATAACAGGATTCCCTGCATGGAGAGACTTGGAAACTAGAGACGACCTAATGTTCAAGCTTGCATTTCTTCAAGAAGCACCAGAGATACCTTATGAACTCGATTGGGATTGCAAAAGTTTCTTAAGGAAGTGTTTTATGAAGGATCCTAGACAGAGATGGACTGCTACAATGCTTCTCACTCATCCTTTCATGCAGAAAGAATATCCAACATCTTTTATAATTAATAATTCTTCATCTTTTTTTCTTATATCATATGATATTGTGAGCTATGTATTGTTCATAGCTTTGTTCTTTATTTTAAAACTTGTTTAA 933 0.358 MANWKKLEIIGNGSYATVYLAAVMFPQEESNWKVTAVKSSRPFPYSFASLRKEKKILELFIGCKEILQCFFYTYTIERGFSIYNLFMEFAPYGSLADLIRKGPLPEKEVILCTHMLLKGLSCIHGKGIVHCDLKPDNILLFPSSEDPTKFQLKISDFGLSKIRGERNADFGQIKFRGTPFYMSPESLVGLLEASLDIWSLGCIVIEMITGFPAWRDLETRDDLMFKLAFLQEAPEIPYELDWDCKSFLRKCFMKDPRQRWTATMLLTHPFMQKEYPTSFIINNSSSFFLISYDIVSYVLFIALFFILKLV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00601 310 ProSitePatterns Protein kinases ATP-binding region signature. 10 38 IPR017441 GO:0005524
Spst4g00601 310 SUPERFAMILY Protein kinase-like (PK-like) 3 289 IPR011009 -
Spst4g00601 310 Pfam Protein kinase domain 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00601 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Spst4g00601 310 ProSiteProfiles Protein kinase domain profile. 4 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00601 310 SMART serkin_6 4 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00601 310 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 273 - -
Spst4g00601 310 Gene3D Transferase(Phosphotransferase) domain 1 1 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00601 Spst-Chr4 13427000 13427932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00601 4 271 MAP Kinase Kinase Kinase AT4G36950 42.545 7.47e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Spst4g00601 Pkinase 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00601 - - gmx:102660670 414.846