Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00582 ATGGCGAGGAAGCGAAAACAGCCGCCTCAACCCGCTCAATCCGCAGAGCCCCCTCTCAAACAGCATCAACAACAGCCCCAATTGAATGTAGAGGCAGAGTATAAAGAAGAAGAACAATACGAAGAAGAAAGCGAAGAAGAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAAGCGAAGAAATTGAAGAAGAACCAGCACCTAACAATGAAACCTCAAAGCAGCACTCCACGTCTTCATCCTCTCCAAACGACGACGACGACGACGACGACGAGCCAATCCAGAATCTTCTAGAACCCCTCGGTAAGGATGAGGTCACGAGACTCCTCATCGAGGCCGCCTCCAAGCACCGCGACGTGGCGGACCAGATACGCCGCTCCGCCGATGCCGATCCCGCGCACCGCAAGATCTTCGTACACGGGCTCGGCTGGGACACCACGGTCGAAACCCTCGCCGCCGCGTTCCGCCCCTACGGCGAGATCGAGGACTGCAAGGCCGTCGCCGACAAGGCCACCGGCAAGTCCAAGGGATACGGCTTCGTCCTCTTCAAGACCCGCCGTGCTGCCCGCAACGCGCTTCGCCAGCCGCAAAAAAGGATCGGCAACCGCACTGCCGCCTGCCAACTGGCGTCCGTCGGTCCGGTCCAGCCGTCGCAGGCTACGCTTACGACGGCTTCGGGGGCTTTGGACTTCTCGCAGAGGAAGATCTACGTGAGCAACGTGGGTGCGGAATTGGATCCGCAGAGGCTTCTGTCGTTTTTTGCGCGCTTTGGGGAGATTGAGGAAGGGCCTTTAGGGCTTGATAAGGTTACTGGGAAACCGAAGGGGTTCTGTTTGTTTGTTTATAAGAGCGTGGACGGTGCGAAGCGGGCGTTGGAGGTGCCGCACAAGAAGTTTGAGGGGCATATTTTGCACTGCCAGAAGGCAATTGATGGTTCCAAGCAACAGCGAGTGGGGATGGCGCAGGGTAGTTCACAGAGTGGTGGGTTTGTTGGTGTGGGGGTAGTGCCAATGCCGGGTCACTTGATGGCTCCGGCTGGGCCAGCGGTAGGAGGAGGTGCAGTAGGGGCGGCTGTGCAGCCAGTTAATCCGGCAGTTGGGCAGGCACTGACAGCGTTGCTCGCATCTCGGGGTGCCTCCGGGTTGCAGCTGAATGGGTTGTTGGGGATAGGGTCACCAGGGGCGCACACTGGCAGTTATCTTGGGCAAGGGAGTGTGAATCCAGGGGGTGTTGGTGTTGGAGGGTATGGGAATCAAGTAGGGTTGACGAGTTCATATGCAAGCCAGCAGCAGGTGGGCATAGGTGGATCTGGAAGACTTCAGCAGCAGCAGCAGCAGCATGGTGGGGGGCAGTATGGTGGGGTTGTGCCTTACATGGGTCACTAG 1434 0.569 MARKRKQPPQPAQSAEPPLKQHQQQPQLNVEAEYKEEEQYEEESEEEVEEEEEEEEEEEEEEEEEEEEEEEEEESEEIEEEPAPNNETSKQHSTSSSSPNDDDDDDDEPIQNLLEPLGKDEVTRLLIEAASKHRDVADQIRRSADADPAHRKIFVHGLGWDTTVETLAAAFRPYGEIEDCKAVADKATGKSKGYGFVLFKTRRAARNALRQPQKRIGNRTAACQLASVGPVQPSQATLTTASGALDFSQRKIYVSNVGAELDPQRLLSFFARFGEIEEGPLGLDKVTGKPKGFCLFVYKSVDGAKRALEVPHKKFEGHILHCQKAIDGSKQQRVGMAQGSSQSGGFVGVGVVPMPGHLMAPAGPAVGGGAVGAAVQPVNPAVGQALTALLASRGASGLQLNGLLGIGSPGAHTGSYLGQGSVNPGGVGVGGYGNQVGLTSSYASQQQVGIGGSGRLQQQQQQHGGGQYGGVVPYMGH 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00582 477 MobiDBLite consensus disorder prediction 35 82 - -
Spst4g00582 477 SUPERFAMILY RNA-binding domain, RBD 247 347 IPR035979 GO:0003676
Spst4g00582 477 MobiDBLite consensus disorder prediction 449 469 - -
Spst4g00582 477 Gene3D - 243 350 IPR012677 -
Spst4g00582 477 Gene3D - 127 242 IPR012677 -
Spst4g00582 477 Coils Coil 30 81 - -
Spst4g00582 477 MobiDBLite consensus disorder prediction 449 466 - -
Spst4g00582 477 SMART rrm1_1 152 224 IPR000504 GO:0003723
Spst4g00582 477 SMART rrm1_1 251 323 IPR000504 GO:0003723
Spst4g00582 477 MobiDBLite consensus disorder prediction 1 117 - -
Spst4g00582 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 339 IPR000504 GO:0003723
Spst4g00582 477 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 40 327 - -
Spst4g00582 477 SUPERFAMILY RNA-binding domain, RBD 142 232 IPR035979 GO:0003676
Spst4g00582 477 MobiDBLite consensus disorder prediction 16 30 - -
Spst4g00582 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 228 IPR000504 GO:0003723
Spst4g00582 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 219 IPR000504 GO:0003723
Spst4g00582 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 320 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00582 Spst-Chr4 12017694 12019127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00582 242 325 C2H2 Transcription Factor Family AT2G19380 35.714 4.40e-10 60.1