Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00562 ATGGATCATTACAAGATTCTAGGCTTGCACCGAACCGCGACCAAGGAGGAAATCAAAGCCGCGTTCAAGAAACTAGCGTTTCAGTTCCACCCGGACATGCATTCCCAATCGCCGAGGACCGTTAGGGAAAACGCTACAATTCGATTCAAGCAGGTATCCGAGGCCTACGAGGTCCTCATGGACGATCGCAAGCGCGCCAACTACAACTTCCGGCGGAGCTCCGGTTCCGGCGGCGGAAACAACCACTATTCCCAGTATAGCTACGGATACAGTAGGAGCGGAAGCAGGCACGATTATAAACCTAGGTCTGCTGGTGGTGGTGGCTTAGCTTCCAATTTTGAACTGGCTCTTCGGATTTTGACGGCGCGGTCTTCTATTCTCTATCTCGGCTTCACAGCGGCTATATTAGGTGGGATAGTTGTCATTGATTCAAGTGGAGAATCCTTATGGAGAATGAAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAAGTCCATTGAGAAGGCCAAAACCTACAGAGAAGATAACGTGAAGGAACGTCCATGA 546 0.4927 MDHYKILGLHRTATKEEIKAAFKKLAFQFHPDMHSQSPRTVRENATIRFKQVSEAYEVLMDDRKRANYNFRRSSGSGGGNNHYSQYSYGYSRSGSRHDYKPRSAGGGGLASNFELALRILTARSSILYLGFTAAILGGIVVIDSSGESLWRMKNSGKSFEEAMKSIEKAKTYREDNVKERP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00562 181 Pfam DnaJ domain 2 69 IPR001623 -
Spst4g00562 181 CDD DnaJ 2 61 IPR001623 -
Spst4g00562 181 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Spst4g00562 181 PRINTS DnaJ domain signature 22 37 IPR001623 -
Spst4g00562 181 PRINTS DnaJ domain signature 4 22 IPR001623 -
Spst4g00562 181 PRINTS DnaJ domain signature 44 64 IPR001623 -
Spst4g00562 181 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Spst4g00562 181 PANTHER CO-CHAPERONE PROTEIN DJLA 4 102 - -
Spst4g00562 181 SMART dnaj_3 1 64 IPR001623 -
Spst4g00562 181 Gene3D DnaJ domain 1 113 IPR036869 -
Spst4g00562 181 FunFam DnaJ domain protein 1 90 - -
Spst4g00562 181 SUPERFAMILY Chaperone J-domain 1 90 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00562 Spst-Chr4 10112689 10117680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00562 3 73 C2H2 Transcription Factor Family AT1G74250 36.620 6.55e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00562 - - var:108343742 290.812