Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00550 ATGGCAGCAAAGCGTTCGAGTTTTAAGCGAAGCTCACCACCACCCCCTTCCCCTCGCCTCGTTTATTATAAACAGCGCAGAGAAATGGTTGGGTGCAGAGGCAGAGCCACTGTCACAGAAGAGTTTATCAATGTCAAAGGGACTTCATCAACTCGATGCTTGGGGTTTGAAGCGATGATGAATGTGGCGTTTGCGATGATGAATGACGTTCAGAGTAATCATCAGGGGCAACAGCAGCAGCAACAACAGGACCCCAATAGTCCAAACCAACAAGGCTCTGAGAGAAGTGAACCCGTGAGGTCAAGATGGACTCCAAAACCAGAACAAATCCTCATACTTGAGTCTATCTTCAATAGTGGCATGGTTAACCCCCCAAAAGATGAAACTGTCAGAATAAGAAAGCTGCTTGAGAAATTTGGCACCGTTGGTGATGCCAATGTCTTCTACTGGTTCCAAAATCGCCGCTCTCGCTCCCGCCGCCGCCAACGCCAGATTCAGGCCACCCTTAACCAAGGTGGCGGTGCAAGTACTAATATTCCATATCAACACCACCATCAAAACAACCCTGCTCTTGTTTCAAACACAGGTTTTGGTGGTGCTAATTCCTCTTTCCCTCACTCTTCCTATGTCTCTGGTTCCTCTTCCTCCTGTGGTGGTGGCGGTGAAGAAAGCTTGGGTGACTTCTTCTCACCGTCTACTCAAATGGGTTTTCCTGGAATTGAGCATCATACTTCAGCTGCATCATCATCAGTTTTGTACCCTTCTGAAGCTTCCAATTTGAACTATCACTCTGGATTCATCACAGTGTTTATCAATGGGGTTGCAACAGAAGTTCCAAGAGGACCAATGGACATCAAAACAGCTTTTGGTGAAGATGTAATCTTAGTTCATTCCTCTGGAGTTTCAGTTCCCACCAATGAGTTTGGTTTCTTGATGCAGGGTTTGCAGCATGGTGAAAGCTACTTTCTGGTTAGAACTTACTTAACATATCTCTCTATCTCATTGACAACTCTTGTAGAAAACTTCATTGAGTAA 1035 0.456 MAAKRSSFKRSSPPPPSPRLVYYKQRREMVGCRGRATVTEEFINVKGTSSTRCLGFEAMMNVAFAMMNDVQSNHQGQQQQQQQDPNSPNQQGSERSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQATLNQGGGASTNIPYQHHHQNNPALVSNTGFGGANSSFPHSSYVSGSSSSCGGGGEESLGDFFSPSTQMGFPGIEHHTSAASSSVLYPSEASNLNYHSGFITVFINGVATEVPRGPMDIKTAFGEDVILVHSSGVSVPTNEFGFLMQGLQHGESYFLVRTYLTYLSISLTTLVENFIE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00550 344 SUPERFAMILY Homeodomain-like 94 168 IPR009057 -
Spst4g00550 344 Gene3D - 100 167 - -
Spst4g00550 344 MobiDBLite consensus disorder prediction 1 20 - -
Spst4g00550 344 SMART HOX_1 98 165 IPR001356 GO:0003677
Spst4g00550 344 FunFam WUSCHEL-related homeobox 11 100 167 - -
Spst4g00550 344 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Spst4g00550 344 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Spst4g00550 344 MobiDBLite consensus disorder prediction 71 105 - -
Spst4g00550 344 PANTHER WUSCHEL-RELATED HOMEOBOX 11 79 325 IPR044558 GO:0003700|GO:0048830
Spst4g00550 344 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00550 Spst-Chr4 9808038 9814358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00550 80 343 Wox Gene Family AT3G03660 52.901 4.06e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst4g00550 Homeodomain 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00550 - - aprc:113866574 367.851