Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00549 ATGAGTATCTCACTACACTTCAGGAATGGTGGTTGTGGGTTCAGTGCTGAAATGAATGTTTTTCCTTCACCTCCTGTTCCTATTTTTAGTCTCCACTGTTCACACACTTTGGGGTTCATGGGTCATGTTGGAGGAACAGAATCTGAAAGTTCTGACATACCCTTTAAGATTTTGAACCCCTCTGTGATCCAACCCCAGGAGGAGGAAGAAGAATCTTTTGGGGTTGAGAACATGAGCTTGTCTTTGAAACCTGGTGACGAGCTTGAAGCAAATAGTTCTTCTGTCACAGGAAAAGTTAGGCACACTAAGCTTTGTGCCAGAGGACATTGGAGGCCCGCTGAAGATGACAAACTTAAAGAGCTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATGGCAGAACATCTACCGGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACCGAAAGGCTTTCAGTGAGGAAGAAGAGGAGAGGCTCTTGAATGCTCACAAAGCCTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACAGATAACGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGAAGGCAAAGGGAGAAGTCATGTGTCTACAGAAGGAGAAAGCCCACATTTCAGATCTTGCCACCAAAGAATTTGGATTTGACCTTGCCAAAGAATGGAGCCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGGTTCAACAGGAACTAACCTCTCCTTCACTCCCTATTCAGCCAAACCAACTCCTATGTCTTTTCACAACCATTGTCCTGTTCAGAATAACCGATCCTTTGGTTCTCTAATTGGTTTATCTGGAGAGAGCAGGACACCAGCCAGGGATGTGAGTTGTAACAAATATTTTGGTGCTTGGAAGGGTTCATGTGAGGCTGGAGACGTTGGAAGGCTCATGGGTATGGACCAATCGCATTATTCAGATTCAAACTCATCAGAAGTTTCAGTATCCGAGTCAGTTGCCACCAACGGGACTACCAATCTCTCAATTTATGGGGAAAGTGAAAACATGGGTGATAACAAGGCCAACATGGTCTTCATTGACTTTCTTGGAGTAGGAGCTGCATAA 1143 0.4401 MSISLHFRNGGCGFSAEMNVFPSPPVPIFSLHCSHTLGFMGHVGGTESESSDIPFKILNPSVIQPQEEEEESFGVENMSLSLKPGDELEANSSSVTGKVRHTKLCARGHWRPAEDDKLKELVAQFGPQNWNSMAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKAYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYRRRKPTFQILPPKNLDLTLPKNGASESTISSTIIDESGSTGTNLSFTPYSAKPTPMSFHNHCPVQNNRSFGSLIGLSGESRTPARDVSCNKYFGAWKGSCEAGDVGRLMGMDQSHYSDSNSSEVSVSESVATNGTTNLSIYGESENMGDNKANMVFIDFLGVGAA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00549 380 Gene3D - 107 158 - -
Spst4g00549 380 CDD SANT 161 201 IPR001005 -
Spst4g00549 380 Gene3D - 160 219 - -
Spst4g00549 380 SMART sant 106 155 IPR001005 -
Spst4g00549 380 SMART sant 158 206 IPR001005 -
Spst4g00549 380 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Spst4g00549 380 Pfam Myb-like DNA-binding domain 159 202 IPR001005 -
Spst4g00549 380 SUPERFAMILY Homeodomain-like 107 200 IPR009057 -
Spst4g00549 380 PANTHER MYB PROTEIN-RELATED 107 326 - -
Spst4g00549 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 153 IPR017930 -
Spst4g00549 380 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Spst4g00549 380 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Spst4g00549 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Spst4g00549 380 CDD SANT 110 151 IPR001005 -
Spst4g00549 380 FunFam MYB transcription factor 107 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00549 Spst-Chr4 9758866 9760426 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00549 106 229 MYB Transcription Factor Family AT1G69560 76.613 3.39e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00549 Myb_DNA-binding 6.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00549 K09422 - qsa:O6P43_009928 369.392