Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00547 ATGAATATTTTTCCTCCATCCCCTGTTTCTGTTCTTGGTGTTCCGTGTTCAAACATTTTAGGGGTGATGGGTCATGTTGTTGGAGGCGCGAAATCTGAATGTTCTGATGTACTCTCTCAGGTTTTGAAACACTCAGTGATCCATCCCCAGGAGGGGGAAGAAACATCTTTTGGGGTTAAGGATATGAGCCTGTCTTTGAAACCAGGTGAAGAGCTTGAAGCTAATAGTTTTTCTGCCGTAGGGAAAATTAGGCACACTAAGCTTTGTGCCAGAGGGCATTGGAGGCCAGCTGAAGATGACAAACTTAAAAAGCTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATCGCTGATCATCTTCCAGGAAGATCAGGCAAAAGTTGCAGATTAAGGTGGTTTAATCAGTTGGACCCCAGAATTAACCGAAAAGCTTTCAGTGAGGAAGAAGAGGAGAGACTCCTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCATGGTAGAACAGATAATGCAATGAAGAACCATTGGCATGTTATCATGGCTAGAAGAAAAAGGGACAAGTCATGCATATACCAAAGGAGAAAACCCACGTTTCAGATCCTGCCATCAAAGGATTTGAATTTGACCTTGTCAAAGAACGGAAGCAGTGAATCAGCCATTTCAAGCACCATCATTGATGAATCTGGCTCAACAGGAACTTACCTCTCATTCACTCTCTCTTCAGCCAAACCAACTCCTGTGCCTTTTCACAACCATTGTCCTGCTCAGAATCACCAAGTCTTTGGTGTTCTATTGGGTTTATCTAGAGAAAGCAGGACACCAGCCAAGGATGTGGGTTTTAACAAGCATTTTAGAGCTTGGAACGGTTCATGCGATGCTGGACACATGGGAAAACCCGTGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCATCAGAAGTTTCAGTATCTGAATCAGTTGCCACCAACAAGATTACCAATCTCTCAATGTATGGGAAAAGTGAAAACATGGGTAATAATAGGACCAGCATGTTCTTCATTGACTTTCTTGGAGTAGGAGCTACATGA 1095 0.4283 MNIFPPSPVSVLGVPCSNILGVMGHVVGGAKSECSDVLSQVLKHSVIHPQEGEETSFGVKDMSLSLKPGEELEANSFSAVGKIRHTKLCARGHWRPAEDDKLKKLVAQFGPQNWNSIADHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFHGRTDNAMKNHWHVIMARRKRDKSCIYQRRKPTFQILPSKDLNLTLSKNGSSESAISSTIIDESGSTGTYLSFTLSSAKPTPVPFHNHCPAQNHQVFGVLLGLSRESRTPAKDVGFNKHFRAWNGSCDAGHMGKPVGVDQSHYSDSNSSEVSVSESVATNKITNLSMYGKSENMGNNRTSMFFIDFLGVGAT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00547 364 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Spst4g00547 364 Gene3D - 144 204 - -
Spst4g00547 364 Pfam Myb-like DNA-binding domain 94 154 - -
Spst4g00547 364 CDD SANT 145 185 IPR001005 -
Spst4g00547 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 192 IPR017930 -
Spst4g00547 364 PANTHER MYB PROTEIN-RELATED 91 310 - -
Spst4g00547 364 ProSiteProfiles Myb-like domain profile. 91 137 IPR001005 -
Spst4g00547 364 SUPERFAMILY Homeodomain-like 91 184 IPR009057 -
Spst4g00547 364 Gene3D - 91 142 - -
Spst4g00547 364 CDD SANT 94 135 IPR001005 -
Spst4g00547 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 141 IPR017930 -
Spst4g00547 364 SMART sant 142 190 IPR001005 -
Spst4g00547 364 SMART sant 90 139 IPR001005 -
Spst4g00547 364 FunFam MYB transcription factor 91 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00547 Spst-Chr4 9676244 9677658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00547 85 219 MYB Transcription Factor Family AT5G17800 70.370 1.17e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00547 Myb_DNA-bind_6 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00547 K09422 - qsa:O6P43_009928 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03612 1 45570175 45574533 Spst4g00547 4 9676244 9677658 PCT