Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00544 ATGTCTAGTACGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCCAGTTCTCAGATGGGTTGTCAGATTCAGGCAAACTCTGCAACCATGACCAAGGTTGGTGAAGTTGCTTGTTCTGCTACACTTCTCTGGTTCTTTTCTGATTTTGTTAAAGCGGGCCATACTGCTGAAAGAAACATATCATTAGTAGCAAGCCATGGACAGGTTTACATGTATGATGAAGTAATAGGCTATTACTTGAGAATTGCTGCATTCTTAAATTGTTCATATTCTGTGAATGCTTGCAGTGGCTTAAAGAAAACTGAAGTCGAAAAGCCCTATACTGAAAACACTGAGCAACCTGAGAATTATTCTGATTCAAGGGATAGCAAACAAGAGTCCCCACATAATAATGTGCAGGAAAAGGGGTCAAAAGTAAATAGCAAAACTGTGGAAGATAACACAGAGAGTAGCAGTACAGATCAAGATAAAATCTTCAAAAAACCAGACAAGATTCTTCATTGTCCCCGATGCAACAGTTTAGACACTAAATTCTGTTATTTCAATAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACAGCAGGGGGGACAATGAGAAATGTTCCTGTGGGTGCTGGGAGAAGAAAGAACAAACACCTAGCTTCTCAATACCGGCACATTATTGTAGCTTCTGATGGAATACCAACTACCAGGTTCGAACCTAACGAGTCTTATTGTCACCAACTTGTCTCAACTCTTGAACCTGCTGCTGTTTTCAGGTCATCAACAGATGATGGTACTGTATTGAAATTTGGTCCGGATGCCCCTCCTCTTTGTGAATCCATGGAGTCAATGCTTAATCTTAAAGAACAAAATCAAAGTGTTGATGAAAAACCTGTGAATTGTGCAGAAAATGGTGAGGAGGAAGTATCCATATGTGGATCATTTGTGACCAATGCTTGTACTCCAAGAAACAAATTGACACAACCTAATTCATCAAAACCTTTGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCCAGGTTGGAACAATGTTGCGTCCACTGCATCAGTTCAACCCTCCTCACTACACATGTGTAACCCGTATACAGACCCTGCTTCAATGCAGTTGTGTCCACCAGTGATGGCCGTTCCAACCATCTGCCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGGGTGGACCACCTGTGTGGGGTGCTGGAGCAGGAGCAGTTTCAATGGGTTTCAATGGCTGCCTTTCACCTACTTCCTCTACTAGTAACAGCTGTTGCTCAGGCAACGGCTCCCCTACACTTGGCAAACACACAAGAGAGAATGTTTCCACAGATGAGGAGAAATCAGACATGTGTGTTTTGGTTCCAAAGACCCTTAGAATTGATGATCCAAATGAGGCCTCAAAGTGTCCTACATTGCCTACATTAGGACTCAGGCCTGATAACCAACAATCTGTATCAGAAGGTACCATTTCAAAACGGGGAAAGCCTAAAGAAGGTAAAGACCGTGTGTTGGGTGTGTCTCAAATCTTGGAAGCCAACCCTGCAGCTATTTCTCGTGCTCATGCATTCCAAGAGGGCATGTTGAGGTGA 1656 0.4348 MSSTDPGIRLFGRKIPLPESQIPASSQMGCQIQANSATMTKVGEVACSATLLWFFSDFVKAGHTAERNISLVASHGQVYMYDEVIGYYLRIAAFLNCSYSVNACSGLKKTEVEKPYTENTEQPENYSDSRDSKQESPHNNVQEKGSKVNSKTVEDNTESSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVASDGIPTTRFEPNESYCHQLVSTLEPAAVFRSSTDDGTVLKFGPDAPPLCESMESMLNLKEQNQSVDEKPVNCAENGEEEVSICGSFVTNACTPRNKLTQPNSSKPLQCYPVPPWIFPWNPGWNNVASTASVQPSSLHMCNPYTDPASMQLCPPVMAVPTICPPSFPLQFVPGSYWGGPPVWGAGAGAVSMGFNGCLSPTSSTSNSCCSGNGSPTLGKHTRENVSTDEEKSDMCVLVPKTLRIDDPNEASKCPTLPTLGLRPDNQQSVSEGTISKRGKPKEGKDRVLGVSQILEANPAAISRAHAFQEGMLR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00544 551 MobiDBLite consensus disorder prediction 114 165 - -
Spst4g00544 551 PANTHER CYCLIC DOF FACTOR 2 4 548 IPR045174 GO:0003700|GO:0006355
Spst4g00544 551 MobiDBLite consensus disorder prediction 498 512 - -
Spst4g00544 551 MobiDBLite consensus disorder prediction 114 140 - -
Spst4g00544 551 ProSitePatterns Zinc finger Dof-type signature. 177 213 IPR003851 GO:0003677|GO:0006355
Spst4g00544 551 Pfam Dof domain, zinc finger 172 229 IPR003851 GO:0003677|GO:0006355
Spst4g00544 551 ProSiteProfiles Zinc finger Dof-type profile. 175 229 IPR003851 GO:0003677|GO:0006355
Spst4g00544 551 MobiDBLite consensus disorder prediction 484 523 - -
Spst4g00544 551 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00544 Spst-Chr4 9337856 9342568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00544 117 547 C2C2-Dof Transcription Factor Family AT5G39660 35.730 4.62e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst4g00544 zf-Dof 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00544 - - ccaj:109792807 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03617 1 45643695 45646000 Spst4g00544 4 9337856 9342568 PCT