Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00518 ATGAATAAACCTTTCTTTCACAATTGCGATATCAAATCTACGAAGATGAAGACTTTCTGCTCAATTCAACCACACCACCATTTTCGTTGCACAAGATTTTTCTCTCACACAACCACAAGGACTCAACTTTCTTTTCCTACAAAGGTCTTCTTTTGCCAGGCAAAATCTGGCACAGATGGGTCATTGCATTTAAAATTGATGTCTCCTACTCTATTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGACCTTGTTTTTGAAGAAACGAGGTTTAAGCAATGCGATTGCTGCTAGAACCATCAACAAGTCAGATCTTTTTGTTGATCACCTTATCTCAAAGCTTCATTCTAAACACATATCTTGGTATCTCGCAGGGAGAGAGCTTACAACTCTGGAGATCAGGGATGCACTTTTCCCTTATCTTGAATCTCTTTTTGAAGAGCATGGAGACATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCACCTGTTAAGGATAAATTAGCTGTTCCGATTCCCCCTTCTAATCCAGTGTTAGACTCTAAAAAGCTTAAAGCTGTGTCCCGAGTGAGCGAGATTGACCCGAATGGTGGCATTCTTCGTCCTCATATTGAATATTTGATGGAACTTGGTATGGATATTGAGCAGATTAGGAGTATCACACGAAGATTCCCATCTTTTGCCCACTATAGCTTGGAGGGTAAAATTAAGCCAGTAGTTGAGTTTCTCCTTGAAGTTGGAGTGCCAAAAGAGCACATGCCCTCTATCCTCAATAAAAGACCTCAATTATGTGGAATCAGTTTATCTGAAAATCTTAAACCCACCATGAAGTTCTTTGAATCTTTGGGTGTTGACAAAAGACAATGGCCAAAGATGATCTATCGGTTCCCAGCCATGCTAACTTATAGCAGGTCAAAAGTAATGGAAAGCATAGATTTTCTCCTTGAATTAGGCCTGTCAAAAGAGAGTATAGGTAAGATTTTAACTCGCTGCCCTAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACCGCCAAGTACTTCCGTTCTTTGGGGGTAGATGTTGGCATTCTTCTGTTTAGATGCCCACAGAATTTTGGTCTTAGCATTGAGACCAACCTAAAGCCTGTAACAGATTTTTTCTTGGGGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTGTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACGGGTTACCCAAAATCTGACCTGGTTAAGTTTCCTCAATATTTTGGATACCGTTTTGAGGAAAGGATTAAACCTAGATTTACAATTATGAAAAAATATGGAGTGAAGTTACTGCTGAACCAAGTTCTTTCACTGTCAAGCAGTAACTTTAATAAGGCCTTGAAAAAGAAAATGAAGAAAAGGCTAGAAGGATGGCATTCAAGTTATGGCAGCATAGTAGCTCAATCAGATAACCAAAATTGA 1509 0.395 MNKPFFHNCDIKSTKMKTFCSIQPHHHFRCTRFFSHTTTRTQLSFPTKVFFCQAKSGTDGSLHLKLMSPTLLAAEKEEAKAVLTLFLKKRGLSNAIAARTINKSDLFVDHLISKLHSKHISWYLAGRELTTLEIRDALFPYLESLFEEHGDILVDVVENYPNPPVKDKLAVPIPPSNPVLDSKKLKAVSRVSEIDPNGGILRPHIEYLMELGMDIEQIRSITRRFPSFAHYSLEGKIKPVVEFLLEVGVPKEHMPSILNKRPQLCGISLSENLKPTMKFFESLGVDKRQWPKMIYRFPAMLTYSRSKVMESIDFLLELGLSKESIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIETNLKPVTDFFLGRGYTLEEIGTMISRYGALYTVSLTENLIPKWDFFLTTGYPKSDLVKFPQYFGYRFEERIKPRFTIMKKYGVKLLLNQVLSLSSSNFNKALKKKMKKRLEGWHSSYGSIVAQSDNQN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00518 502 SMART mt_12 326 357 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 SMART mt_12 359 390 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 SMART mt_12 182 214 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 SMART mt_12 219 250 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 SMART mt_12 291 321 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 SMART mt_12 427 458 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 SMART mt_12 395 426 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 Gene3D Transcription termination factor 3, mitochondrial 262 488 IPR038538 -
Spst4g00518 502 Pfam mTERF 68 316 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 Pfam mTERF 307 472 IPR003690 GO:0003690|GO:0006355
Spst4g00518 502 PANTHER CGI-12 PROTEIN-RELATED 180 478 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00518 Spst-Chr4 8035295 8037955 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst4g00518 mTERF 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00518 K15031 - gmx:100781900 801.201