Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00511 ATGGAGAAGCTGAAAACTACGTTCCCACCCGTCACAGATCCAAGGAGCGGTTTCAACCCCGCTTCCAGAAGCTTCCACAGCCTCAAGCCACCACTCCTCCTCCCTCCTCCCGACGTCGCCATCTCTGCCGCTTCCTACATCCATGTCCTCCGTTGCAACTCGCACTTTCCGGACTCCTCCACCGCTGTTATCGACTCCACCTCGGGCAACCGCCTCTCCTACGGCGAACTAATACACCGCGCCGAAACCCTTGCCGCGAACCTCGCCACAGTTTTCAAACTCTCCAAATCCCACACCGCGCTCGTTCTCTCATCAAACAATGTCCAAGTTCCGATCCTCAGTTTCGCACTCCTCTCCCTCGGCGTGGTCATCTCCGCCGCGAACCCTCTCTCCACGGGCTCCGAGCTCAAGCGCCTCTTTCATCTAAGCAAACCCACGATTGTCTTCGCAGTGAGTTCAATCGCGGGAAAAACAGGCCAGTTTCATGTCCGAACGGTCCTCCTCGGCTCGCCCGAGTTCGAGTCGCTCACTCGAACTAAGATTCAGTCTCAGAGTCCACTCACGCCCCCCACGCCGGTGACTCAGTCCGACGTGGCAGCGATTCTGTACTCGTCGGGCACGACGGGGAAGGTGAAGGGCGTGATGCTGACGCACCGTAACCTAACCGCGATAGTCGCAGGATTCGACGCCGCTCGCATGAAGCGCGCGGAGCCTGCCGTGTACCTATATACGGTGCCGTATTTCCATGTGTACGGATTCACGTTCAGCCTGGGGGCGATGGTGCTGTCACACACGGTGGTGATAATGGAGAGGTTCAGTCTGAGGGCAATGCTGAGCGCCACGGAGAAATTCAAAGTGACGCAACTTACGGTTGTACCGGCGCTGATGTTGGCTTTGACACAAGACAGTGTTACAGACGAGTACGATTTGACGTCGTTGGAAGGGATCGTGTGCGGTGGAGCCCCACTGAGGAAGGAAACCGATGAAGCTTTCAAAGCCAAGTTTCCAAACGTTTTCGTCACGCAGGGATACGGTTTAACTGAGTCTGCGGTTGCCCGAACCACCCCGGAGGAGGCTAATCAGGTGGGAACAGTAGGAAGACTGATTCCAAACATTGAAGCCAAAATTGTGAACCCAGAAACAGGGAAAGCCATGTTTCCACGTGAAAAGGGAGAACTGTGGATCAAAGGACCTTACGTCATGAAAGGTTATGTTGATGACCCAGAAGCAACTGCAGCAACTTTGGTGAACGGGTGGTTAAGGACAGGGGACCTTTGTTATTTCGATAACGACGGTTTCTTGTATGTTGTAGACAGATTGAAAGAGTTGATCAAATACAAGGGCTACCAGGTTGCTCCAGCAGAGCTAGAAGAGTTGCTCCTATCTCACCCACACATACTCGAAGCTGCAGTTATTCCATACCCTGATAAGGAAGCAGGCGAAGTGCCAATGGCGTTTGTTGTAAGACAACCTCAAAGTTCCCTTGGCGCAGCAGAAGTAATTGATTTTGTTGCCAAACAGGTTACGCCATACAAGAAAATAAGGCGTGTGGCATTTGTTGATTCCATACCCAAGAATGCTTCCGGAAAGATACTGAGGAAGGAATTACGTAAAGTTGCGCTCTCTAGGTTATAA 1635 0.5272 MEKLKTTFPPVTDPRSGFNPASRSFHSLKPPLLLPPPDVAISAASYIHVLRCNSHFPDSSTAVIDSTSGNRLSYGELIHRAETLAANLATVFKLSKSHTALVLSSNNVQVPILSFALLSLGVVISAANPLSTGSELKRLFHLSKPTIVFAVSSIAGKTGQFHVRTVLLGSPEFESLTRTKIQSQSPLTPPTPVTQSDVAAILYSSGTTGKVKGVMLTHRNLTAIVAGFDAARMKRAEPAVYLYTVPYFHVYGFTFSLGAMVLSHTVVIMERFSLRAMLSATEKFKVTQLTVVPALMLALTQDSVTDEYDLTSLEGIVCGGAPLRKETDEAFKAKFPNVFVTQGYGLTESAVARTTPEEANQVGTVGRLIPNIEAKIVNPETGKAMFPREKGELWIKGPYVMKGYVDDPEATAATLVNGWLRTGDLCYFDNDGFLYVVDRLKELIKYKGYQVAPAELEELLLSHPHILEAAVIPYPDKEAGEVPMAFVVRQPQSSLGAAEVIDFVAKQVTPYKKIRRVAFVDSIPKNASGKILRKELRKVALSRL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00511 544 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Spst4g00511 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 538 - -
Spst4g00511 544 Gene3D - 442 542 IPR045851 -
Spst4g00511 544 Pfam AMP-binding enzyme 57 446 IPR000873 -
Spst4g00511 544 MobiDBLite consensus disorder prediction 1 20 - -
Spst4g00511 544 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Spst4g00511 544 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Spst4g00511 544 SUPERFAMILY Acetyl-CoA synthetase-like 49 542 - -
Spst4g00511 544 CDD 4CL 52 536 - -
Spst4g00511 544 Gene3D - 37 441 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00511 Spst-Chr4 7680134 7694301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00511 5 541 Monolignol Biosynthesis Gene Families AT5G63380 48.741 1.83e-178 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00511 K01904 - gmx:100784234 795.423