Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00492 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCAGAAGCTTATGAATTTCATTCTCAACAATGGTATTCACTGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGTTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGACTTACTGAAATGGAAGAGGATCAGATTATACAGCTACATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTTCCCATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAAAAGAGGTTGAAGCTCCTTGGTTTGGACCCTTTGACCCTGAAACCAATTGAGCAAAAGGAACAGTCTGGTGATGACAAAAATAAGGCAGACATGATTCCAAAAAGCACTTCGAAAGGGTCTGGACAAGGTGTGGAGACCAAGTCTTTGGACATGCATGCCACAGGAGAAGAGCCAAAATCAGAAAAGAAAATGGAAGAAAACAAGGTGATGATGACATGGGATGATACCACTGGATTTTTGAACAATTATGAAGTGTTATGGTCACAGTTGGAGTTAGGATCATGGATGAACCAAGAAACCAAAACCAGCACTAGTTCTTATTGTAGTTCATCTTCTTTCTCACTGGATGATTCTAGCAACCTTTCTGTGGGTGAATCCTCTTACCTTCAAGAGAATTCCTTGCACCAATGGGTTGATGGTTTTGATTCCATTCTGTCATGGGAAACCTTCTGTCCTCTTGAGAAAGATTTTTCCTTCTTGGAAAATAGGCAATAA 834 0.4113 MGRQPCCDKVGLKRGPWTIEEDQKLMNFILNNGIHCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGLTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPLTLKPIEQKEQSGDDKNKADMIPKSTSKGSGQGVETKSLDMHATGEEPKSEKKMEENKVMMTWDDTTGFLNNYEVLWSQLELGSWMNQETKTSTSSYCSSSSFSLDDSSNLSVGESSYLQENSLHQWVDGFDSILSWETFCPLEKDFSFLENRQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00492 277 SMART sant 66 114 IPR001005 -
Spst4g00492 277 SMART sant 13 63 IPR001005 -
Spst4g00492 277 FunFam MYB transcription factor 11 67 - -
Spst4g00492 277 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst4g00492 277 FunFam MYB transcription factor 68 129 - -
Spst4g00492 277 CDD SANT 16 61 IPR001005 -
Spst4g00492 277 Gene3D - 70 148 - -
Spst4g00492 277 MobiDBLite consensus disorder prediction 129 177 - -
Spst4g00492 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst4g00492 277 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst4g00492 277 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 227 - -
Spst4g00492 277 Pfam Myb-like DNA-binding domain 71 110 IPR001005 -
Spst4g00492 277 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst4g00492 277 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst4g00492 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst4g00492 277 MobiDBLite consensus disorder prediction 131 145 - -
Spst4g00492 277 Gene3D - 11 67 - -
Spst4g00492 277 MobiDBLite consensus disorder prediction 163 177 - -
Spst4g00492 277 CDD SANT 71 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00492 Spst-Chr4 7049255 7050488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00492 1 199 MYB Transcription Factor Family AT5G16600 58.621 6.37e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00492 Myb_DNA-binding 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00492 K09422 - gmx:100819471 454.136