Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00486 ATGCGATCATCATCTTCTTCTTCCTCCTTCTGTTACAGATTCACCTACGATGTGTTCCTCAACTTTCGAGGGAAAGATACCCGTCACGGTTTTACAGGCAATCTGTACAAAGCTCTATGTGATAGTGGAATCCGCACCTTCATCGATGACCAACATCTGTCTAAAGGGGACCAAGTGACCTCTGCACTTGAGAATGCAATCCGAGAGTCCAGAATTTTCATCGTCGTCCTCTCTGAAAACTATGCGTCTTCTTCCTTCTGCTTAAACGAACTTGATTACATTCTGAGGTTTATAAAGCATAAGGGTCGGTTGGTTTTGCCAGTTTTTTATGGGGTTTACCCTTCTGATGTGAGACACCACACAGGTAGTTTTGGAGAGGCATTGGCTCATCATGAAAAGAAGTTCAATTCTTATTATAATATGGAGAAGCTGGAGACATGGAAGATGGCTCTGCATCATGTGGCTAACTTGTCTGGCTACCATTTCGAACATGGGGAAGGATATGAATATGAGTTTATTCAGAGGATTGTTGAGTTTGTTTCTAGCAAGATTAATTATGCTCCCTTACATGTTGCGGATTACCCAGTTGGACTAGAGTCAAAAGTGCTAAAAGTAATGTCACTTCTGGATGTTGGATCTGATGATGTTGTCCACATGGTGGGGATCCACGGAATCGGTGGAGTGGGTAAAACAACTCTTGGTGCTGCTGTTTATAATTTAATTGCTGACCATTTTGAAGCTTTATGTTTCCTTGAAAATGTGAGAGACACTTCAAACAAACAAGGGTTACAACATCTCCAATGCAACCTTCTTTCTGAGACAGTTGGAGAGATTAAGTTAACCAGTGTCAAACAAGGAATTTCCATAATACAACATAGGCTCCAACAAAAGAAAATTCTTTTGATTCTAGATGATGTTGACACACAAGAACAGCTACAGACACTTGCTGGAAGACCTCATTGGTTTGGTCTAGGCAGTAGAGTCATAATCACGACTCGAGACAAACAATTGCTAGCATGTCACGGTGTTAAAAGAACATATGAGGTGAATGAATTGAATGAAAAAGATGCTCTGGAATTACTTACTTGGAAAGCCTTCAAGTTGGAAAAAGTTGATCCATGTTACAAGGATGTTTTGAATCAAGCAGTTAGTTATGCTTCGGGCGTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTATATGGAGGAAACATAGAACAATGGCAATCTACTTTAGATCGATACAAAAGAATTCCTAATAAAGATATCCAAGAGATACTTAAAGTAAGTTATGATTCTTTGGAAGAAGATGAGCAAAGTGTTTTTGTGGACATTGCTTGTTGCTTCAAAATATATGACCTGGCAGAGATGGAGGATATACTTCGTGCTCATCATGGACATTGCATGAAACATCATATCAGAGTGTTGGTTGAAAAATCTCTCGTAAAGATTAGTTTGGATGGTAACGTGACACTACATGACTTGATCGAAGACATGGGTAGAGAAATTGTCCGGAAAGAATCACCTAAAGAGCCTGGGAAACGTAGCAGGTTATGGTTGCTTGAGGATATAGTTCAAGTTTTAGAAGAAAATAAGGGAACTAGTCAGATTGAAATCATTTGTATGGATTTCCCTTTATATGAAGAAGTAGAAATAGAATGGGATGGATATGCCTTCAAGAAGATGAAAAATCTCAGAACACTTATTATCAGAAAGGGTCATTTCTCCAAAGGTCCCAAACATCTTCCTAATTCTTTAAGAGTGATGGAATGGTGGGGTTATCCTTCACAGAATTTGCCATACGATTTTCATCCGAAGCAACTTTCTATATTCAAGTTACCCTGCTGTGAGTATACATCACTTAAGTTGGCTGACTTTTTAAGAAAGAAGTTTGTGAATATGACAAGTTTAAATTTTGACGAATGTCAATATTTAAAACAGATACCAGATGTATCTTGTCTCACACATTTGGAAAAATTGTCATTTCGATGGTGTCCAAAGTTATTTGCACTTCATTATTCTGTTGGGTTCTTGGAGAAACTTAAACTCTTAAATGCAGAAGGTTGCTCCATGCTTAAGAGTTTTCCTCCCATCAAGTTAATCTCTCTTGAGCAACTCAAACTTCGGTATTGTCATAGTCTTAACAATTTTCCAGAAATATTAGGAAACATGGAAAATATAAAAGAACTTGACTTGAGAGGAACTCCGGTAAAAAAATTCCCACTTTCATTCCAAAATCTTACTCGGCTTCGAAAATTGCATCTGTGTTTGAGGGTTCAAGCCATGAAAAATGGTTGTGTTGGCATTCCCCTTTCAAGCATTTGCATGATGCCAGAGCTGGTCGATATTACAGCAAGTAGATCGGAAGGGGAGTTGTTCGGTGAAGTGGATGATGGTGTAGAAAAAGTGAGTTCAACCTTGTCTACAAACGTTCAATATCTTCAGCTCAGATGCTGCAACCTAACAGATGAATTTTTTACAATAGTTCTCCCATGGTTTGCTAATATGAAGAACTTAGACCTATCAGGGAATAATTTCACAGTCATTCCGGAATGCATGAAAGAATGTCATTTTTTAACTAATCTAAATTTGAATTTCTGTGAGCGACTTCGAGAAATTAGAGGGATTCCTCCAAACTTGAAATATTTCTCTGCAATAGATTGCCTATCCTTGACTTCCTCATGTAGAAGCATGTTACTGAAACAGGAACTGCATGAAGCTGGAAGCACCTTCTTTTATTTGCCAGGAGCCAAGATTCCAGAGTGGTTTGAGTTCCAAAGATTGGAATTGCCAATTTCTTTCTGGTTTCGTAACAAACTCCCAGCCGTGACTATTTGCCTTGCTTTGGAGCGGGTGTGTAAGTATTGCCCGTCAAGAGGTGATAAATGTAGACTCCTCGTGATCCCTAGTACATTGAGACTCATGTCACCCATCGTGATCATCAATGGCAAGGAACATTTGTTTGACAGTTGGGAGATGATAAATGATTGTACTTGTGTTTTTGATCTGAGGGAGACAAAACTAAGAAATGACTTAGATGAAGAACTTTTGGACAATGAATGGAACCATGCAGAGGTTACATGTCGATATACTAGTTTTGGCCAAACCTTTATAAAAAGTGGAATCCATGTATTGAAACAGGAAAATAGCATGGGGGTTATTCGATTCACTGATCCTTGTAGAAAAAGAAATCTGGATGATGAGTTCAATAGTTTCAAATCTCTAAACCAACAGTTGCTGAAAAAATAA 3249 0.3844 MRSSSSSSSFCYRFTYDVFLNFRGKDTRHGFTGNLYKALCDSGIRTFIDDQHLSKGDQVTSALENAIRESRIFIVVLSENYASSSFCLNELDYILRFIKHKGRLVLPVFYGVYPSDVRHHTGSFGEALAHHEKKFNSYYNMEKLETWKMALHHVANLSGYHFEHGEGYEYEFIQRIVEFVSSKINYAPLHVADYPVGLESKVLKVMSLLDVGSDDVVHMVGIHGIGGVGKTTLGAAVYNLIADHFEALCFLENVRDTSNKQGLQHLQCNLLSETVGEIKLTSVKQGISIIQHRLQQKKILLILDDVDTQEQLQTLAGRPHWFGLGSRVIITTRDKQLLACHGVKRTYEVNELNEKDALELLTWKAFKLEKVDPCYKDVLNQAVSYASGVPLALEVIGSNLYGGNIEQWQSTLDRYKRIPNKDIQEILKVSYDSLEEDEQSVFVDIACCFKIYDLAEMEDILRAHHGHCMKHHIRVLVEKSLVKISLDGNVTLHDLIEDMGREIVRKESPKEPGKRSRLWLLEDIVQVLEENKGTSQIEIICMDFPLYEEVEIEWDGYAFKKMKNLRTLIIRKGHFSKGPKHLPNSLRVMEWWGYPSQNLPYDFHPKQLSIFKLPCCEYTSLKLADFLRKKFVNMTSLNFDECQYLKQIPDVSCLTHLEKLSFRWCPKLFALHYSVGFLEKLKLLNAEGCSMLKSFPPIKLISLEQLKLRYCHSLNNFPEILGNMENIKELDLRGTPVKKFPLSFQNLTRLRKLHLCLRVQAMKNGCVGIPLSSICMMPELVDITASRSEGELFGEVDDGVEKVSSTLSTNVQYLQLRCCNLTDEFFTIVLPWFANMKNLDLSGNNFTVIPECMKECHFLTNLNLNFCERLREIRGIPPNLKYFSAIDCLSLTSSCRSMLLKQELHEAGSTFFYLPGAKIPEWFEFQRLELPISFWFRNKLPAVTICLALERVCKYCPSRGDKCRLLVIPSTLRLMSPIVIINGKEHLFDSWEMINDCTCVFDLRETKLRNDLDEELLDNEWNHAEVTCRYTSFGQTFIKSGIHVLKQENSMGVIRFTDPCRKRNLDDEFNSFKSLNQQLLKK 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00486 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Spst4g00486 1082 SUPERFAMILY L domain-like 547 897 - -
Spst4g00486 1082 PRINTS Disease resistance protein signature 219 234 - -
Spst4g00486 1082 PRINTS Disease resistance protein signature 293 307 - -
Spst4g00486 1082 PRINTS Disease resistance protein signature 386 400 - -
Spst4g00486 1082 PRINTS Disease resistance protein signature 676 692 - -
Spst4g00486 1082 SUPERFAMILY "Winged helix" DNA-binding domain 422 529 IPR036390 -
Spst4g00486 1082 Gene3D - 185 344 IPR027417 -
Spst4g00486 1082 Gene3D - 14 184 IPR035897 -
Spst4g00486 1082 SMART till_3 15 157 IPR000157 GO:0007165
Spst4g00486 1082 ProSiteProfiles TIR domain profile. 14 184 IPR000157 GO:0007165
Spst4g00486 1082 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 736 IPR044974 GO:0006952
Spst4g00486 1082 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 186 - -
Spst4g00486 1082 Gene3D Ribonuclease Inhibitor 548 906 IPR032675 -
Spst4g00486 1082 Gene3D - 351 435 IPR042197 -
Spst4g00486 1082 Pfam TIR domain 16 183 IPR000157 GO:0007165
Spst4g00486 1082 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 160 IPR035897 -
Spst4g00486 1082 Pfam NB-ARC domain 200 434 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00486 Spst-Chr4 6930803 6935179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00486 16 755 WRKY Transcription Factor Family AT4G12020 30.299 4.19e-76 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00486 - - gmx:100784366 1618.59