Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00464 ATGGGTCGTGCAAGAATAACCTTCAAACGTATTGCAAATGAAAGATCTCGTAGGACGACTTTCTTGCAAAGAAAGAGAGGGTTGATGAAGAAAATGTCTGAATTTTCCTCCAAGTGTGGAGGTGGACACTGCTTAATTGTGTATGATGATGGCAATGGTGATGCTGGACCAGTGACTTGGCCTCAGAATCCCGAAGAGGTATATGCCGTCATTCATAACTATTATGTGTTTCGATCAAAGAAAGAGAGACCTCGTAACACCTATGGTATTGAAGACTTTATTGAGAATAGGAAGAACATGATTGAAGCTGAGATTTCCAGAGTAAATAAACAAATCAACAGCATCAAGTACCCAACATGGGATCCAAGTATCAGAAACATGGAAGAGGAGCAATTGACGGATTTCTGTACTCATGTGGATGCCAAAATTAAAGCTTGTGACCAGAGAATTAATCTGTTGAAAAGCAAGCCTCATCATGGTGAAGCCAATTGTAGTTTCTTGCAAGATATGATACAGGCAAGTACTACCTCCTCCCATCCTAACCTACCCAATTTCATGATGCAAAACCTCTCAGAAGGCCAAATCATCCCAACTGCAATCCAGGCACTTCAGAATGGGAAGGTGGACTTTACAAATTCAAATAATGGAGGTGATGGAGTTTGCAATCAAGAAATCAATGATATGTTGAGAAATATGCAACAAAGTGGTGGTGATGATGATGCTTGCTTTAGTTTTGTGCCAAATATCAGTCAGAAAAATGCTTCTGCTACCACTTCACTTTCAAACACCATCTCTCAAAACCAACCTCTGCTTGAAGATTTTACTCAACTTACTAATTTTGATTGGTCTTGTCTATTTAGAGATGATCCTATGTGTTCTACTAGTGAACCCCATGAATCTTTCTTTCGAAGTTTCTATGCTGAGTATCAGAATGAACAGCAAGCAGGAGGAGCTTTACATGGCTTTCAACCACCACTGGATGGATTTCAATCAGATTTCTAG 1002 0.3972 MGRARITFKRIANERSRRTTFLQRKRGLMKKMSEFSSKCGGGHCLIVYDDGNGDAGPVTWPQNPEEVYAVIHNYYVFRSKKERPRNTYGIEDFIENRKNMIEAEISRVNKQINSIKYPTWDPSIRNMEEEQLTDFCTHVDAKIKACDQRINLLKSKPHHGEANCSFLQDMIQASTTSSHPNLPNFMMQNLSEGQIIPTAIQALQNGKVDFTNSNNGGDGVCNQEINDMLRNMQQSGGDDDACFSFVPNISQKNASATTSLSNTISQNQPLLEDFTQLTNFDWSCLFRDDPMCSTSEPHESFFRSFYAEYQNEQQAGGALHGFQPPLDGFQSDF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00464 333 PANTHER MADS BOX PROTEIN 3 133 - -
Spst4g00464 333 CDD MADS_SRF_like 2 87 IPR033897 GO:0000981|GO:0000987|GO:0045944
Spst4g00464 333 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Spst4g00464 333 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Spst4g00464 333 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Spst4g00464 333 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Spst4g00464 333 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Spst4g00464 333 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst4g00464 333 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00464 Spst-Chr4 6495172 6496173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00464 1 149 Type I MADS-box Gene Family AT5G55690 31.613 9.10e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst4g00464 SRF-TF 6.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00464 - - gmx:100806649 276.559