Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00458 ATGGAAGATACACAACAGCGACTTGGGTCCGGAATGTATAGTGTTGCTGGTGGAACTGCATCTGGGAAAACAACTGTGTGTAACCTCATAAATACCCAACTTCGTGATCATCGCGTTGTCCTCATTACCCAAGACTCGTTTTATTGCTCATTGAGCGACCAGACGAAGCAAAAACTTAATGAGTACAATTTTGATCATCCTGATGCCTTTGATATGAAGCTTTTGCTTTCAACAATGGAAAAATTGAAATGTGGACTACCTGTTGCTATACCAAATTATGATTTCAGCAACCATAAGAGAATTGAACCAGCACACCAGGTTCACTCTGCAGATATCATAATTTTAGAAGGGATATTAGTTCTTCATGACCCAGGTGTCCGTAATCTATTGAACATGAAGATCTTCGTTGATGAAGATTCTGATGTACGTCTTTCACGAAGGATGCAACGTCTTGCTATTGAGCGTGGAAGGAATGTTGAGAATGTGCTAGACCAAATAAAGGGAATGCATACTCTTATCCGTGATGTTAAGGCAACAAAGCATGATTTTGCCTTCTACTCAGATCGTTTAATTAGATTGGTTGTTGAGCATGGATTGGGTCACCTTCCTTTTTCTGAAAAGCAGGTGATAACACCAACAGGATCTGTATATTCAGGTGTTGTTTTCTGTAGTAGGCTGTGTGGAGTTTCAGTAATTAGAAGTGGAGAAAGCATGGAGAATGCATTAAGAGCATGTTGTAAAGGAATCAAGATTGGTAAAATCCTTATTCATGGACATGGCACAAAAGGTCGACAGTTAATCTATGAGAAGCTACCAAAAGACATTGCAAGTCGTCATGTTTTGTTTCTTGATCCAGTTTTGGCAACAGATGACGTCACAAGAAACTCTGCAGTGAAAGCAATCTCTCTACTTCTGAATAAAGGTGTACCAGAATCTAACATTATATTTCTAAACTTAGTAGCAGCACCACAAGGAATAAATGCGGTCTGTGAGAGATTTCCACTGCTAAAACTTGTGACATCAGAGATTGATGCATCACTGAATGAGAATTCTCGGGTCATCCCTGGCTTAGGGGAGTTTGCTGATCGTTACTTTGCCACTGATGATTAG 1110 0.3991 MEDTQQRLGSGMYSVAGGTASGKTTVCNLINTQLRDHRVVLITQDSFYCSLSDQTKQKLNEYNFDHPDAFDMKLLLSTMEKLKCGLPVAIPNYDFSNHKRIEPAHQVHSADIIILEGILVLHDPGVRNLLNMKIFVDEDSDVRLSRRMQRLAIERGRNVENVLDQIKGMHTLIRDVKATKHDFAFYSDRLIRLVVEHGLGHLPFSEKQVITPTGSVYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTKGRQLIYEKLPKDIASRHVLFLDPVLATDDVTRNSAVKAISLLLNKGVPESNIIFLNLVAAPQGINAVCERFPLLKLVTSEIDASLNENSRVIPGLGEFADRYFATDD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00458 369 PANTHER URIDINE KINASE 15 274 - -
Spst4g00458 369 FunFam Probable uracil phosphoribosyltransferase 152 367 - -
Spst4g00458 369 Pfam Uracil phosphoribosyltransferase 165 367 - -
Spst4g00458 369 Pfam Phosphoribulokinase / Uridine kinase family 14 167 IPR006083 GO:0005524|GO:0016301
Spst4g00458 369 Gene3D - 154 367 IPR029057 -
Spst4g00458 369 CDD PRTases_typeI 226 340 IPR000836 -
Spst4g00458 369 CDD UMPK 15 170 IPR000764 -
Spst4g00458 369 PRINTS Uridine kinase signature 85 100 - -
Spst4g00458 369 PRINTS Uridine kinase signature 141 151 - -
Spst4g00458 369 PRINTS Uridine kinase signature 155 166 - -
Spst4g00458 369 PRINTS Uridine kinase signature 10 27 - -
Spst4g00458 369 PRINTS Uridine kinase signature 40 51 - -
Spst4g00458 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 165 IPR027417 -
Spst4g00458 369 SUPERFAMILY PRTase-like 161 367 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00458 Spst-Chr4 6412271 6427594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00458 2 369 PRT Gene Family AT4G26510 52.315 1.95e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00458 K00876 - gmx:100803453 483.796