Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00427 ATGGCGAATGTATCCAATAATTTTCCAGAAGGTCTCAGGATCCTTGCAGTTGATAATGACCCCTCTATTCTTGAGTTTATCAATCAAATGTGTTTTCAATGCAATTATCATGTTACGACATTCTCTGATTCTCCACTAGCTCTGAATTATGTTCGGGAGAAAAAGAATTTTATTGATTTGATACTCATTGAAGTTCACATGCCAAATATGAATGGCTATGAATTCCTTAAGCATGTGGGCATGGAAATTAGTGTTCCTGTTATCATGATGTCTTGTGATAATGCTAAAAGTGTTGTCATGAAGGCTATTGAAGATGGAGCCTGTGATTATTGGACTAAGCCTTTGCATGAGAACCAATTCAAGATAATTTGGAAGCATGTTGCTAAGAAAGTTTGGAATGAAATTAAGCTACCAGGAATAGAAGAAATTTCTTCTTCTGTTATCGAGGCACCAATGACGAACAAAAAACAGAACAATTCAAATGTCGAAGAATCTAATGATGGTAAATTGGATGACAATTATGAACCCCTGCCCAAAAAGCCACGTGTGGTGTGGACACAAGAACTGCATAGCCAATTTGTCAATGCAGTGATGCAAATTGGGATTGAAATGATGAATATTCCTGGTTTGACAAGAGAACATGTTGCAAGTCATTTGCAGGTTGGTCTTAATATGAACTGA 681 0.3671 MANVSNNFPEGLRILAVDNDPSILEFINQMCFQCNYHVTTFSDSPLALNYVREKKNFIDLILIEVHMPNMNGYEFLKHVGMEISVPVIMMSCDNAKSVVMKAIEDGACDYWTKPLHENQFKIIWKHVAKKVWNEIKLPGIEEISSSVIEAPMTNKKQNNSNVEESNDGKLDDNYEPLPKKPRVVWTQELHSQFVNAVMQIGIEMMNIPGLTREHVASHLQVGLNMN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00427 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 217 IPR045279 GO:0009736
Spst4g00427 226 CDD REC_typeB_ARR-like 14 128 - -
Spst4g00427 226 Gene3D - 177 225 - -
Spst4g00427 226 SMART REC_2 12 124 IPR001789 GO:0000160
Spst4g00427 226 MobiDBLite consensus disorder prediction 151 175 - -
Spst4g00427 226 SUPERFAMILY CheY-like 10 132 IPR011006 -
Spst4g00427 226 SUPERFAMILY Homeodomain-like 178 220 IPR009057 -
Spst4g00427 226 Gene3D - 5 133 - -
Spst4g00427 226 Pfam Response regulator receiver domain 14 120 IPR001789 GO:0000160
Spst4g00427 226 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Spst4g00427 226 NCBIfam myb-like DNA-binding domain, SHAQKYF class 180 221 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00427 Spst-Chr4 5570154 5571143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00427 4 220 Response Regulator Gene Family AT4G31920 40.088 2.37e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst4g00427 Response_reg 1.3e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00427 - K14491 gsj:114399361 253.832