Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00418 ATGCGAATGAGTTGCAATGGGTGTCGTGTGTTGCGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCGTGTTTGGAATGGATCAAGAACCCAGAAGCGCAGGGTAATGCCACTGTTTTTCTTGCTAAGTTCTATGGTCGTGCTGGTCTCATGAACCTCATCAACGCTGGCCCTCAACACCTTCGACCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGTGGTCGAATTGTGAACCCAATTTACGGGTCGGTGGGCTTGTTATGGTCGGGAAACTGGCAGCTTTGTCAAACCGCCGTGGAAGCCGTTTTGAAAGGCGAGCCGGTGACGCCAATCACATCGGAAGCGGCGGCTAATGCGCGGGCCCCACCTCTCAAGGCCTACGACATTCGCCACGTGTCAAAAGACAAGGCGATCGAGACTCCAAAAACCAAAACCCGAGTCCGGGTTAAGCGAACCGGCGGCGACCTACCTATCAAACCGAAGGCCTCCAAGGGAACCGGATTGGTTCCGGTCGACCCGGACACAAACCAGACTACGAGTCACGAGTCGGGACTGAGCCACCTGTCGGAAGCCGCGGCCATCGTGGAAGGAGAGAGCAAAGAGAGTGAAAGTGTGGTGTCGATGGATAGTGATCGAGTCGATGAAAGTAGCAATGATCTTGGTTTGGAATTGAGCCTTGGGTTCGAACCGGTTTCACGTGGTCATCACATGGTTCCCATGAAGAAGAGAAAGATCGAGTTTAAAAGTAACGATGACTCCATTGAGAAAGAGTCTTGGAAGATGGAGTTAGGGCTTGAGTCCTCTGCTTGA 813 0.5191 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKNPEAQGNATVFLAKFYGRAGLMNLINAGPQHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQTAVEAVLKGEPVTPITSEAAANARAPPLKAYDIRHVSKDKAIETPKTKTRVRVKRTGGDLPIKPKASKGTGLVPVDPDTNQTTSHESGLSHLSEAAAIVEGESKESESVVSMDSDRVDESSNDLGLELSLGFEPVSRGHHMVPMKKRKIEFKSNDDSIEKESWKMELGLESSA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00418 270 PIRSF AS2 1 165 IPR017414 -
Spst4g00418 270 PIRSF AS2 160 270 IPR017414 -
Spst4g00418 270 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 213 - -
Spst4g00418 270 MobiDBLite consensus disorder prediction 154 218 - -
Spst4g00418 270 MobiDBLite consensus disorder prediction 195 218 - -
Spst4g00418 270 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Spst4g00418 270 MobiDBLite consensus disorder prediction 171 187 - -
Spst4g00418 270 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00418 Spst-Chr4 5209662 5211074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00418 1 246 AS2 family AT3G02550 62.846 2.00e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst4g00418 LOB 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00418 - - gmx:100814175 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00418 4 5209662 5211074 Spst4g00418 4 5209662 5211074 ECH