Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00403 ATGTATGCAAAGTGTGGATCACTTAAACAAGCTCGATATGTTTTTTATTCAACCCAGAACCCAGATATTGTCTCATGGAGTAGTTTAATTGTTAGCTATGCTCAGTTTGGACTTGGACACGAGGCTCTAAATCTCTTCATAATGATTAGAAATCTTGATGTCCAGCCTAATGAGGTCACCTATCTACGGTTCTCAGTGCATGCAGTCACATTGGATTTGTGGAGGAAGAGGGCTGCAGAAAATATACTAAAACTTGATCCTTGCAATTCTGCTGCTCTAATTCTACTTTCTAATATACATGCTTATGTCGGCAATCAGAAAGAAGTTGCCATACTACGAAATTTGATGAAAGAAATGGGTGTACAGAAGATTCCTGGTCAAAGTTGGATAGAAGTTAAGGATCAGATCCACGTGTTCTTTTTAGAAGATAGTTCTCATTCACAAAGGGGCAAAATCTACATGATGCTTGAAGATGTATGGTTGCATATGCTCGATCATGGTTATGATCCTTGTCAGAGAAAAAAGATAGAGAACGTGAAGATTTTGAGCGTCGCTGAAGACGAAAGCGTGAAAACGAGGGAAGTAGTGGAAGAGAAAACAGCGTCCACGAAGAAGAGGAAGCGCAAGGGAACCTCTTCTGAAACTGTTGCAGGATTCAACGTTTTTAGAAGTTCCACATCTGTGGCGCAGTCTAGTGGTGAAACGCAAGTTGATGAGGAGTCTATTGAGCTGAATAAGAAGAAGAAGAAGAAGGAGCAAAATCGACAACTCGAGCGGGACGCGATATTCAGGAAGCAGCACAACATTCACGTTTCAGGTTATAATGTGCCGTCTCCGCTTCAAAGCTTTGATGAGTTGAAATCAAGATACAACTGTCCATCGTATTTGCTGCGCAATCTTAAGGAGCTTGGATTCAGAGAACCAACGCCTATTCAAAGACAGGCTATTCCAGTACTTCTAGATGGTCGTGAATGCTTTGCTTGTGCACCAACTGGTTCTGGGAAAACCCTTGCTTTTGTGTGTCCAATGCTTATGAAGCTGAAGGACCCTGAAAAAGAGTTGAGTATCTGGTCCTGGATGAATCGGATAAAGTTATTTAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAATCCCTCAATCATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCCTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGATGGAAAACTTCTTGCAATTCGCCAAAGTTTTGCAGAGAGTTTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGTGAACTTGCATTTGACAACGTTAGAATCGATGTCATCCATTCTGATTTGTCTCAACAAGAGGTTGTTCTCTATCCCTTTGAACATCATAAGATATTTATAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGAGGCATGGATTTCAAAGGTGTGAATTGTGTGATCAATTATGATTTCCCTGATTGTGCCTCCGCATATGTCCACAGAATTGGGCAGGGAGGACTGGAGAAGCGATTACTTTTTACAGAGGAAGACATTCCATTCCTGCGAAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGCCTCATGGAGTTGCAGAAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAACAGCATAG 1809 0.4168 MYAKCGSLKQARYVFYSTQNPDIVSWSSLIVSYAQFGLGHEALNLFIMIRNLDVQPNEVTYLRFSVHAVTLDLWRKRAAENILKLDPCNSAALILLSNIHAYVGNQKEVAILRNLMKEMGVQKIPGQSWIEVKDQIHVFFLEDSSHSQRGKIYMMLEDVWLHMLDHGYDPCQRKKIENVKILSVAEDESVKTREVVEEKTASTKKRKRKGTSSETVAGFNVFRSSTSVAQSSGETQVDEESIELNKKKKKKEQNRQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYNCPSYLLRNLKELGFREPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPEKELSIWSWMNRIKLFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEDGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNVRIDVIHSDLSQQEVVLYPFEHHKIFIAGKTWVLIATDVVARGMDFKGVNCVINYDFPDCASAYVHRIGQGGLEKRLLFTEEDIPFLRNVANLMAASGCEVPSCLMELQKKEVEEAPAQKRFNLNKTRPITA 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00403 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Spst4g00403 602 SMART ultradead3 304 423 IPR014001 -
Spst4g00403 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 285 313 IPR014014 GO:0003724
Spst4g00403 602 Gene3D Tetratricopeptide repeat domain 1 70 IPR011990 GO:0005515
Spst4g00403 602 CDD SF2_C_DEAD 420 539 - -
Spst4g00403 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 543 IPR027417 -
Spst4g00403 602 SMART helicmild6 460 542 IPR001650 -
Spst4g00403 602 MobiDBLite consensus disorder prediction 230 255 - -
Spst4g00403 602 Gene3D - 420 598 IPR027417 -
Spst4g00403 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 419 579 IPR001650 -
Spst4g00403 602 MobiDBLite consensus disorder prediction 239 255 - -
Spst4g00403 602 Pfam E motif 77 131 IPR046848 -
Spst4g00403 602 Pfam DEAD/DEAH box helicase 309 414 IPR011545 GO:0003676|GO:0005524
Spst4g00403 602 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 240 350 - -
Spst4g00403 602 Gene3D - 359 419 IPR027417 -
Spst4g00403 602 Gene3D - 242 357 IPR027417 -
Spst4g00403 602 Pfam Helicase conserved C-terminal domain 438 539 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00403 Spst-Chr4 4855717 4866796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00403 379 578 Eukaryotic Initiation Factors Gene Family AT3G19760 29.268 2.37e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00403 K14779 - gmx:100800969 351.288