Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00396 ATGTTCCCTTACAGTTCCAACCTCTACCCTTCCTTCCCTTCATCATCTTCTTCATTCCATCCTTTTCCTTTCCTCAACCTTGATAATGCTTCTGCAAGCAACACCCTTCTTCATGATCCACTTTCTGTGCCTTACTTACCAACGCATCACAACCCTCAAAGCATCCAAGAAGCACTGAGCAATTTACCAGTCACGGATCATAACTGTGGTGGTGGAGGTTCTGCAATGACCAAACCTGACCCAAGTGGTGGTGGTGGTGCTACTCACTATGGCCTTTCTTGTTTCCTCACAAAGAAGCCAGCTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGTTTGAGGGACCGGAGGGTGAGGTTGTCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTCGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGTTGGCGAGGAGCAAGAACAGCAACAACAGTGAAGAAGGAGCCAGGAGCTTCTCTTCTTCATCCGAGTGTGATGATGACTGTGAAGTGGTTTCTGAGATCAAGCAGAAGCAACAACTCATCACTGGTGATGCTGCTACTCCACGCAACCTACAACAAGGGTTAGATTCAAGTGATAACAAGTCACCGACATTGCTGGCTGCAAGGGAGAGGATGAAGTTGAAAAGGACACAGAAGGAACCTGCAAAATTGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATTATGTGCAATGTTAACCCCAACACAGGGAGGGTGCAACAAGACTTGAAGAAAAAGTGCCCTGCAATTGAAAATAACCACTCTCAACTCATGCATCAATCAAGGTCACCCACTCACCCTCACCACCTTGTGGAAGCACCTAGAGATGACTTCAACGTTATTGAGGAATCCATTGTGATCAAGAGAAAATTGAAGCCATCGTTGATGTCCTCTTCTCATCACCATCACCAAAACCTTGTGATCCCGAAGGAACCACCATGTTTCAACAACAACAACAACAGTGAGTACCACCCCTTCTCCAATTTATCTCCAAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACACTAG 1218 0.4631 MFPYSSNLYPSFPSSSSSFHPFPFLNLDNASASNTLLHDPLSVPYLPTHHNPQSIQEALSNLPVTDHNCGGGGSAMTKPDPSGGGGATHYGLSCFLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKNSNNSEEGARSFSSSSECDDDCEVVSEIKQKQQLITGDAATPRNLQQGLDSSDNKSPTLLAARERMKLKRTQKEPAKLKESREKARARARERTSNKIMCNVNPNTGRVQQDLKKKCPAIENNHSQLMHQSRSPTHPHHLVEAPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLVIPKEPPCFNNNNNSEYHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00396 405 MobiDBLite consensus disorder prediction 224 255 - -
Spst4g00396 405 ProSiteProfiles R domain profile. 243 260 IPR017888 -
Spst4g00396 405 ProSiteProfiles TCP domain profile. 102 160 IPR017887 -
Spst4g00396 405 MobiDBLite consensus disorder prediction 197 222 - -
Spst4g00396 405 MobiDBLite consensus disorder prediction 161 181 - -
Spst4g00396 405 Pfam TCP family transcription factor 101 261 IPR017887 -
Spst4g00396 405 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 80 366 IPR005333 GO:0003700
Spst4g00396 405 MobiDBLite consensus disorder prediction 197 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00396 Spst-Chr4 4741092 4742424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00396 97 369 TCP Transcription Factor Family AT1G67260 33.929 2.69e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst4g00396 TCP 5.5e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00396 - - gmx:100801549 635.18