Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00394 ATGGATCCCTCTCGCCGCGGCCCACGCGCCGTGATCGACCCCATCCCCAAGTTCCGCCAAGTCGGGTTCTTTGCCCCGCCCGAACGCTCCCAATCGGGTCCTCCCGACCCGACCCACTCATCGCCGCAAATCTCCAACTCCCTCTCGCCGGTCATGATCCCTCCGGCGCGCCACCTGTCCGAAAACCTCCTCCTCCACGCGCCCCCAGCCGCCTCTCCACTCCGTGCAGACTCCGGTGGCGGCGGAACTTCCTTTGACTCTGGGGACTTCTTCCCCGCGCCGCTGTCGCCCGCGCTTCCGTCGTCATCGTACTCCAGCAGGATTTCCGGTGATTTTTTCAAGGGGAACGGCGGGAAGGTGTCGGCGTCGTCGTTCCCCCGCGGAGGATTCGACCTGACGGCGATGAAGGCGGCGGCGGCGCCGAGCGTCGTTGTGCCAGCCAGCGAGCTTACCACGGTTTCGGTGGTGAATGATTCGCTGGGGATTCCCGAAAAAGAAAAAGGAAGCAGAGCAGGAGGGCCAGCAGTGGAAGTGAAAGACCAACCTAATAATTCAAAACAGAAACCAAAAACCTCAAAAGCTGAAAGACGTGCTCTTCAAGAAGCTCAAAGAGCTGCAAAGGCTGCAGCGAAAGCTGAAGGAAATAAGGCATCTGGAACTGCGGCTTCAGTGAATGCCAAACCGGCTAAAGCTGCAAAGCCTGCACAGAAAATTGAAAATGCAGCAGTTGCAGCACCTGAAAAGAAAGGAGGTGAGATTCCACCAGAAAAGGATAGAAAAAAAGATGCTCCTCAACCACGCATGCAATATGATGACAAGAGCCGAGTGGAGAAAGCTAAACGTCGTGCAGTGGTGAAACAAACTGAAGCTAGGAACAGAGTTGAGTTGTTCAGGCATTTGCCGCAATATGAACATGGGAGTCAGCTTCCAGATCTTGAGGCAAGGTTTTTCCATCTTTCTCCAGTGCACCCAGCTGTTTATAAGGTGGGTTTGCAGTATCTAACTGGAGATATATCTGGTGCCAATGCTCGGTGTATTGCAATGCTTCAAGCATTTCAGGAGGCCATCAAAGACTACAAGGTTCCACAAGAGAAGACTCTTGTAAGAGACTTAACTGCAAAAGTTAGTAGTTATGTATCGTATCTTATTGAGTGTCGACCTCTGTCAATCAGCATGGGAAATGCAATTAGGTTTCTCAAAAGTCGGATAGCCAAGCTACCTTTGAACTTGTCTGAATCAGAAGCAAAAGCTTCTCTTCTTTCAGATATTGAGCGTTTTATTAGTGAGAAGATTATACTTGCCAACAAGGTCATAGTGAAACATGCTGTCACCAAGATAAGAGATGGTGACGTTCTTCTAACTTATGGGTCCTCATCAGCTGTTGAAATGATACTATTACATGCACATGAGTTGGGTCGACAGTTTCGTGTTGTGGTAGTTGACTCTCGCCCAAAGCTTAGAGGGCAACTTTTGCTTCGCAGGCTGGTGGAGAAAGGTCTTAGCTGTTCATACACTCATATAAATGCCGTTTCCTACATAATGCATGAAGTTACTCGAGTGTTTCTGGGTGCTTCGTCAGTTTTGTCTAATGGAACAGTATATTCAAGAGTAGGGACTGCATGTATTGCAATGGTGGCTCATGCATTCCGTGTACCTGTCATAGTATGTTGCGAGGCCTATAAATTTCATGAACGGGTACAGCTGGATTCAATATGCTCTAATGAACTTGGTGATCCAGATGTCATTTCAAACGTTTTGGGTAGAGAGGATGTCCACCACTTGGATGGCTGGGCCAATATTGAAAATCTGCAACTCTTAAATCTGATTTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGGTTCCCCCCACTAGTGTGCCTGTAATTGTAAGAGAATATGGGAGAGAACAGCCTTCCTTCCTGTTCCGAAATTTTGGATATTTCTGTCTGTATTCACCTGTCCTAGAGAAGAGTGCAAATTTTCGCCTCTCCAGGAAGATTGAGCCTTGCATTCTCATCATCTGTAACAATTCATTTTAG 2061 0.4818 MDPSRRGPRAVIDPIPKFRQVGFFAPPERSQSGPPDPTHSSPQISNSLSPVMIPPARHLSENLLLHAPPAASPLRADSGGGGTSFDSGDFFPAPLSPALPSSSYSSRISGDFFKGNGGKVSASSFPRGGFDLTAMKAAAAPSVVVPASELTTVSVVNDSLGIPEKEKGSRAGGPAVEVKDQPNNSKQKPKTSKAERRALQEAQRAAKAAAKAEGNKASGTAASVNAKPAKAAKPAQKIENAAVAAPEKKGGEIPPEKDRKKDAPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYEHGSQLPDLEARFFHLSPVHPAVYKVGLQYLTGDISGANARCIAMLQAFQEAIKDYKVPQEKTLVRDLTAKVSSYVSYLIECRPLSISMGNAIRFLKSRIAKLPLNLSESEAKASLLSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSSAVEMILLHAHELGRQFRVVVVDSRPKLRGQLLLRRLVEKGLSCSYTHINAVSYIMHEVTRVFLGASSVLSNGTVYSRVGTACIAMVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGDPDVISNVLGREDVHHLDGWANIENLQLLNLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGREQPSFLFRNFGYFCLYSPVLEKSANFRLSRKIEPCILIICNNSF 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00394 686 Pfam Initiation factor 2 subunit family 338 630 IPR000649 GO:0044237
Spst4g00394 686 MobiDBLite consensus disorder prediction 1 52 - -
Spst4g00394 686 MobiDBLite consensus disorder prediction 155 285 - -
Spst4g00394 686 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 39 644 - -
Spst4g00394 686 MobiDBLite consensus disorder prediction 250 285 - -
Spst4g00394 686 MobiDBLite consensus disorder prediction 70 92 - -
Spst4g00394 686 Gene3D - 433 640 IPR042529 -
Spst4g00394 686 SUPERFAMILY NagB/RpiA/CoA transferase-like 321 640 IPR037171 -
Spst4g00394 686 MobiDBLite consensus disorder prediction 34 50 - -
Spst4g00394 686 MobiDBLite consensus disorder prediction 183 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00394 Spst-Chr4 4720492 4725842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00394 4 644 Eukaryotic Initiation Factors Gene Family AT5G38640 65.762 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00394 K03680 - gmx:100775998 1052.74