Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00368 ATGGAAGCAGAACAACACTTTCATCTTCCTCGTCAATCTTGCGGTTCTCCGGTTCAAGGCATGGAAAACGTGGTGGCAACGGTTAGCGGTTACCACGGCTCCGAGCGGTTCGATCTCATCAAGCTGATTTCACTTGCCGGCGCCAATTACGTTGGCGCAATGTCGAAATCGATAACGCATCTGGTGTGTTGGAAATTTGAAGGAAAGAAATATGATATTGCGCTGAAGTTTAGAATTCCTGTAGTGAACCACCAATGGATCGAGGACTGCGTAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTACACCTTGCGAAGTGGAAATGAAGTAGGGCGATTGTTGCTGGAAGTTCCCCTCACTGTTCGAGTCAGTAGCTTGACAAAGAAAAAATTGGTCAGTGACAAGTTACATGATACTGGGTCTGAAAGGCAAAAAACCAACTTTGGTCCTGGAACCTCGAGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGATGAGTCAAGTTCAAATTCGTCTAGATTGTCAAGGAAAGGAAAAAGGAATATTTGCAATGGTAAGGGAGTCAATATTGTGGCTGGACCTTCTCGTAAAGAAAGAAGACTTGCGAGAAATCTTGTTGATGAAGTCGTGTTGGCTCCTTCAGATTTGGATTTAAGCCCAGATGACAGCATATTTAGAAAGGATAGACTACAAGCAGACGCTCAAGCTACCTCTAGCCTTTCTGGTGGTGTTAATAATAACATTATTGTACAAAATAGTGAAGAATCAAATGCTGGGTTAAGTAATCAAAGTAGATCTATCGATGGTGGTTCAGATGATATTGAACAGATCAACGATTCAAGGCATTTATCTACTCCTAGAAATTCAACTTTGTTTAAAGAAGATGCCCTACCTATGCCACAAACAACAATAGATATATGTTCCAGTGATGATGAAAAATCCACAGATTGTGATCAGGTTGATAATGGTGCTGACTTACCTACTTCAACAGAGATGTCATGTGTTATATGTTTCACAGATTTCAGCTCAACACGAGGGATTCTGCCGTGTGGACATCGATTTTGTTTTCCATGTATCCAGAGTTGGGTTGATCATAGGACTTCAATGAGAAAAATATCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTCGAGCATGCAGCCACCGCTGATCAAAAAGTATACTCCCAGACAATCCCATGTGACAATTCAGCCTCAGATATTTTTATCCCCATGGATCAAGAATTACCGTATAATATCTTTGAGTCTGTACAGGCAGGAGCTTGTGTAATTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGTGATATTTGCCGAGTTCGAAAGATCCATTCATATTGCATGGACCCTCCTCTACGGCCATGGACATGCAATCATTGCAAGGAACTTCGGATGCTTTATCGTAGTAATCACTCGTATTAG 1470 0.417 MEAEQHFHLPRQSCGSPVQGMENVVATVSGYHGSERFDLIKLISLAGANYVGAMSKSITHLVCWKFEGKKYDIALKFRIPVVNHQWIEDCVKEGRRVPEDSYTLRSGNEVGRLLLEVPLTVRVSSLTKKKLVSDKLHDTGSERQKTNFGPGTSRTYVLEDSCLMKKHDESSSNSSRLSRKGKRNICNGKGVNIVAGPSRKERRLARNLVDEVVLAPSDLDLSPDDSIFRKDRLQADAQATSSLSGGVNNNIIVQNSEESNAGLSNQSRSIDGGSDDIEQINDSRHLSTPRNSTLFKEDALPMPQTTIDICSSDDEKSTDCDQVDNGADLPTSTEMSCVICFTDFSSTRGILPCGHRFCFPCIQSWVDHRTSMRKISTCPLCKASFVMIKKVEHAATADQKVYSQTIPCDNSASDIFIPMDQELPYNIFESVQAGACVICRGREPEDLLESCDICRVRKIHSYCMDPPLRPWTCNHCKELRMLYRSNHSY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00368 489 PANTHER F5A8.9 PROTEIN 151 486 - -
Spst4g00368 489 MobiDBLite consensus disorder prediction 258 274 - -
Spst4g00368 489 SUPERFAMILY BRCT domain 11 105 IPR036420 -
Spst4g00368 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 331 402 IPR013083 -
Spst4g00368 489 SMART ring_2 337 381 IPR001841 -
Spst4g00368 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 488 IPR013083 -
Spst4g00368 489 ProSitePatterns Zinc finger RING-type signature. 353 362 IPR017907 -
Spst4g00368 489 SMART BRCT_7 18 94 IPR001357 -
Spst4g00368 489 Gene3D BRCT domain 18 103 IPR036420 -
Spst4g00368 489 SUPERFAMILY FYVE/PHD zinc finger 433 479 IPR011011 -
Spst4g00368 489 Pfam twin BRCT domain 24 86 IPR001357 -
Spst4g00368 489 ProSiteProfiles Zinc finger RING-type profile. 337 382 IPR001841 -
Spst4g00368 489 MobiDBLite consensus disorder prediction 258 298 - -
Spst4g00368 489 Pfam Zinc finger, C3HC4 type (RING finger) 337 381 IPR018957 GO:0046872
Spst4g00368 489 SUPERFAMILY RING/U-box 331 389 - -
Spst4g00368 489 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00368 42 110 Core DNA Replication Machinery Family AT4G02110 40.845 9.29e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00368 - - gmx:100815034 781.171