Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00356 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCACCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCTCCATGCATAGTGTACTGTCATGCAGACTCAGCATACCTATGTTCATCCTGTGATGCTCGTGTCCATGCAGCTAACCGTGTGGCCTCCAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGCTGACGCAGCTTCTCTTTGTTCATCATGCGATGCTGACATTCACTCCGCAAACCCTCTCGCCAGCCGCCACCACCGTGTCCCCATTCTCCCCATCTCGGGTTCCCTCTTCGGGGAACCAGATCACGAACCTGAACACGGGTTCGTGAACGAGGTGGAAGAGGCTTTTTTTGAGTATGATGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAGGGTAACGAAGAGGATGAGAATGGTTTTTTGTATGGTGATGAGTATTTGGAGAACCTTGTGGATTGTAACTCGTGTGGTCACAATAATAACCAGTTTAGCAACGTTTATCAGCACCAGCAGAACTTCATCACTGTCCCTCAGAACTATGCAGTCGTTCCAGTTCAGGGGTTGCAACAAGCGCAGCATTTTCAGACGGGGTTGGAGTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCGCTTAGTCAAAGTGTATCAGTTTCATCAATGGATGTTGGTGTTGTCCCTGAATCAACAATAAGTGACATCTCAATGTCCTATTCAAAGTCACCAATAGGGACAGGAGACCTATTTCCTCCCCTTTTCATGCCTTCACACCTTACACCACTGGACAGAGAGGCCAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACTAGACCACGCATTAAGGGTCGATTTGCAAAGAGAACTGATGTGGACCAAATGCTCTCCACGACACTATTCACCGAAGTTGGAGGTACCATTTTCCCATCTTTCTAG 1050 0.4838 MLKEGTNNVGGSTSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGSLFGEPDHEPEHGFVNEVEEAFFEYDDEIEAASWLLPHPVKGNEEDENGFLYGDEYLENLVDCNSCGHNNNQFSNVYQHQQNFITVPQNYAVVPVQGLQQAQHFQTGLEFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTISDISMSYSKSPIGTGDLFPPLFMPSHLTPLDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVDQMLSTTLFTEVGGTIFPSF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00356 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 334 IPR045281 GO:0009909
Spst4g00356 349 SMART bboxneu5 63 105 IPR000315 GO:0008270
Spst4g00356 349 SMART bboxneu5 15 62 IPR000315 GO:0008270
Spst4g00356 349 Pfam CCT motif 284 326 IPR010402 GO:0005515
Spst4g00356 349 CDD Bbox1_BBX-like 19 62 - -
Spst4g00356 349 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Spst4g00356 349 ProSiteProfiles CCT domain profile. 284 326 IPR010402 GO:0005515
Spst4g00356 349 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Spst4g00356 349 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Spst4g00356 349 CDD Bbox1_BBX-like 62 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00356 Spst-Chr4 4296377 4298390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00356 1 349 C2C2-CO-like Transcription Factor Family AT3G02380 54.918 1.38e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst4g00356 zf-B_box 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00356 - K12135 gmx:100782635 582.022