Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00355 ATGAAGACGATTCTTTCTTCCGAGACGATGGACATTCCAGAAGGCGTGAGCATCAAGGTTCACGCTAAGGTGATCGAGGTGGAGGGACCTCGTGGAAAATTGGTGCGAGATTTCAAACATCTCAACCTCGATTTTCAGCTCATCACCGACGAGAAAGGGAAGAAGAAGCTGAAGGTTGACGCCTGGTTTGGGTCTCGCAAAACCTCCGCCGCTATTCGTACCGCCCTCAGCCATGTCGACAACCTCATCACTGGCGTCACCAAGGGCTACCGCTACAAAATGAGGTTCGTCTACGCTCACTTCCCCATCAACGCCAGCATAGCCAACAACAACAAGTCCATCGAAATCCGAAACTTCCTTGGCGAGAAGAAGGTGAGAAAAGTGGATATGCTTGACGGTGTGTCTGTTGTTCGATCTGAAAAGGTGAAGGACGAGTTGGTTTTGGATGGAAATGATATAGAACTTGTTTCGAGGTCTTGTGCTCTCATTAACCAGAAATGCCATGTTAAAAACAAGGATATTCGGAAGTTTCTTGATGGTATTTACGTCAGTGAGAAGGGAACAATAGGAGGAAGATTCACATTTCATGGTTACAATTGCAAAGCAACGAAGAAACCAAACCAGAGTTCACAGCACTCGCCATTCTCCTCCACAAAGAGGAAGATTCACGTTTCATGGCTGCAAAATAGTGACACCAGAGAGGTACTGATGCACGCTGCAAAGGTTGAGTTGTTGGAATATTCTAAGAGCCTCTTCATAAGCAAGAACTTGTGCAGGCCACTAACTTTCTGCCACGATGGCACCGTTGATTCTCCCCCAACACTACTTGGTTCACCTCACTGA 843 0.4686 MKTILSSETMDIPEGVSIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLITDEKGKKKLKVDAWFGSRKTSAAIRTALSHVDNLITGVTKGYRYKMRFVYAHFPINASIANNNKSIEIRNFLGEKKVRKVDMLDGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIGGRFTFHGYNCKATKKPNQSSQHSPFSSTKRKIHVSWLQNSDTREVLMHAAKVELLEYSKSLFISKNLCRPLTFCHDGTVDSPPTLLGSPH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00355 280 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst4g00355 280 FunFam 60S ribosomal protein L9 1 89 - -
Spst4g00355 280 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst4g00355 280 Gene3D - 90 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst4g00355 280 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst4g00355 280 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst4g00355 280 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Spst4g00355 280 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst4g00355 280 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst4g00355 280 FunFam 60S ribosomal protein L9 90 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00355 Spst-Chr4 4288788 4296228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00355 1 189 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 87.368 2.14e-120 340