Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00354 ATGGTGTGTCCGGTACTTTGTATTTGGTTCTTGGGTATTTCAATGGGCAAGCCAAGAAGAGGAGAAGATGCTCTTTGTTTTGTGGTTTTTTTCTGGTTTTGGAGCTCTTCCAATGCCTTGCTTTCTCCTAAGGGAGTGAACTTTGAAGTGGAAGCTTTAATGGGCATAAAAGCTTCTCTTGTGGATCCTCATGGCATTCTGGATAATTGGGATGCGGATGCAGTTGATCCATGCAGCTGGAATATGGTCACATGTTCCCCTGAGAATCTTGTTATTAGCCTGGGCATTCCCAGTCAAAATTTATCTGGTATTCTATCTCCAAGCATAGGAAACCTAACAAATCTTCAGACTGTGGTGCTACAAAATAACAACATAACTGGGTCAGTCCCTTCAGAGGTAGGAAAACTTTCCAAGCTTCAAACTCTTGATCTCTCTGACAACTTCTTCAATGGGGAAATTCCTCCCTCTCTGGGTCGCCTGAGAAGCCTCCAGTACTTGAGGCTTAATAATAACAGTTTTGATGGAGAATGCCCAGTATCACTAGCGAACATGGCGCAGCTTGCTTTTCTCGACTTGTCCTACAATAATCTGAGTGGCCCTATACCTAGAATTTCGGCCAAATCATTCAGTATTGTAGGAAACCCCCTAGTTTGCGCTACAGAAAAAGAAAAAAATTGCCATGGGATGACACTAATGCCTATGTCAATGAACTTGAACAGTACTGAGGATGCTTTACCATCTGGCAGAACAAAGGCTCACAAAATGGCCATTGCCTTTGGTCTGAGTCTTGCATGCCTTTGCTTGCTCGTTTTTGGTCTTGGACTTGTTTTATGGAGGAGGCACAAGCGTAAACAACAGGCATTCTTTGATGTTAAAGACCAGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTAAGAGAACTCCAGATTGCTACTAACAACTTCAGCAACAAAAACATTCTGGGAAAGGGTGGTTTTGGAAATGTCTACAAGGGAATTCTCCCAGATGGCACTCTTGTGGCAGTCAAGAGGCTTAAAGATGGCAACGCCATTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATCAGCTTGGCGGTGCACCGAAACCTCCTCAAATTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGAAGTGTTGCTTCTAGGCTCAAGGGCAAACCAGTGTTGGATTGGGGCACAAGGAAGCAAATTGCCATAGGAGCAGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGATCCAAAGATAATTCACAGAGATGTGAAGGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGAGATTTTGGGTTGGCAAAGCTTTTAGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTGGGGCATATTGCACCAGAGTATCTTTCCACAGGGCAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAGAGGGCACTGGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTGAGGAAAATCCACCAAGACAAGAAGCTTGAGTTGCTTGTGGACAAGGATCTCAAGAACAGCTATGACAGGATTGAGCTTGAGGAAATTGTTCAAGTGGCACTCTTGTGCACACAATATCTTCCTGGCCAAAGGCCCAGAATGTCTGAAGTTGTACGCATGCTTGAAGGTGATGGCCTTGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGACACCACCAAATGCAGCAAACCACATGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGACTCTTCTTTGTTGGTCCAAGCAATGGAACTCTCAGGCCCCAGATGA 1923 0.442 MVCPVLCIWFLGISMGKPRRGEDALCFVVFFWFWSSSNALLSPKGVNFEVEALMGIKASLVDPHGILDNWDADAVDPCSWNMVTCSPENLVISLGIPSQNLSGILSPSIGNLTNLQTVVLQNNNITGSVPSEVGKLSKLQTLDLSDNFFNGEIPPSLGRLRSLQYLRLNNNSFDGECPVSLANMAQLAFLDLSYNNLSGPIPRISAKSFSIVGNPLVCATEKEKNCHGMTLMPMSMNLNSTEDALPSGRTKAHKMAIAFGLSLACLCLLVFGLGLVLWRRHKRKQQAFFDVKDQHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGNVYKGILPDGTLVAVKRLKDGNAIGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQDKKLELLVDKDLKNSYDRIELEEIVQVALLCTQYLPGQRPRMSEVVRMLEGDGLAEKWEASQSADTTKCSKPHELSSSDRYSDLTDDSSLLVQAMELSGPR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00354 640 Pfam Leucine Rich repeats (2 copies) 113 153 IPR025875 -
Spst4g00354 640 Gene3D Ribonuclease Inhibitor 46 228 IPR032675 -
Spst4g00354 640 FunFam Putative LRR receptor-like serine/threonine-protein kinase 46 228 - -
Spst4g00354 640 MobiDBLite consensus disorder prediction 599 622 - -
Spst4g00354 640 SMART serkin_6 319 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00354 640 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Spst4g00354 640 Pfam Protein kinase domain 320 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00354 640 FunFam Somatic embryogenesis receptor kinase 1 288 395 - -
Spst4g00354 640 SUPERFAMILY L domain-like 49 320 - -
Spst4g00354 640 FunFam Somatic embryogenesis receptor-like kinase 1 396 608 - -
Spst4g00354 640 SUPERFAMILY Protein kinase-like (PK-like) 296 589 IPR011009 -
Spst4g00354 640 ProSiteProfiles Protein kinase domain profile. 319 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00354 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Spst4g00354 640 Gene3D Transferase(Phosphotransferase) domain 1 396 608 - -
Spst4g00354 640 Pfam Leucine rich repeat N-terminal domain 49 86 IPR013210 -
Spst4g00354 640 Gene3D Phosphorylase Kinase; domain 1 288 395 - -
Spst4g00354 640 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 29 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00354 Spst-Chr4 4282375 4286803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00354 25 640 Receptor kinase-like Gene Family AT5G16000 77.528 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Spst4g00354 Pkinase 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00354 - - gmx:100806650 1145.95