Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00340 ATGAGGAAACCTGATATGATGGGAAAAGACAACACCACCATCACCACCGCCACCATTAACACCAACAACAGCATTAAGAGCAAGCTAAGGAAGGGGTTGTGGTCACCTGAGGAAGATGAGAAGCTGATAAGGTACATGATCACTAAGGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGTCTTCGTTGGATCAACTACTTGAGACCTGATCTTAAACGTGGTGCATTTTCACCCCAAGAGGAAGAGCTCATCATTCACTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATTGCTGCACGTCTTCCTGGTCGCACAGACAATGAGATCAAGAATTTCTGGAACTCAACACTGAAGAAAAGGTTGAAAATCAGCAGCAACAACAACACTTCATCACCAAACAACAGTGACTCATCAGACCCTAGAGATGTCATGGGGGGAATCATGCCAATGAATGAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCCATGCAATCCATGCATGCCAACATGGCCCTAACTGACCAGTTTGACCCCTTTCCCCTGTTGTCCAACCGTTATGACATGACCGGTGCAGCCGGTTTCCTAGACAACAACATGGCTGCATGCTTAAACCATAATGATGATGGGGTTGTTCATGGTGGTTATGGGGCATTGGACCCTAATAAAATGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGACAATTCTAGTACCCCAATTGATGTGAAAACCCATAACAACAACAACCACTTCAAGAATAGTTCTTTCAATAACACTGATCATCATCATCATATCCAAACCTCCAACAACGTAGTTGTGGAGGATTTGTTTGGCTTTGGAAATCATGGGCAAGGTGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTTCCTTCCCTTGATTTCCAAGTTTAA 1020 0.4451 MRKPDMMGKDNTTITTATINTNNSIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKISSNNNTSSPNNSDSSDPRDVMGGIMPMNEHDLMTMCMDSSSSTSSSSMQSMHANMALTDQFDPFPLLSNRYDMTGAAGFLDNNMAACLNHNDDGVVHGGYGALDPNKMGLESDFSLPPLESRSIEDNSSTPIDVKTHNNNNHFKNSSFNNTDHHHHIQTSNNVVVEDLFGFGNHGQGENFRMGEWDFEGLMQDMSYFPSLDFQV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00340 339 MobiDBLite consensus disorder prediction 135 152 - -
Spst4g00340 339 FunFam MYB transcription factor 28 84 - -
Spst4g00340 339 CDD SANT 34 78 IPR001005 -
Spst4g00340 339 CDD SANT 86 129 IPR001005 -
Spst4g00340 339 MobiDBLite consensus disorder prediction 254 273 - -
Spst4g00340 339 MobiDBLite consensus disorder prediction 135 159 - -
Spst4g00340 339 PANTHER MYB DOMAIN PROTEIN 55 25 287 - -
Spst4g00340 339 FunFam Transcription factor MYB46 85 155 - -
Spst4g00340 339 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
Spst4g00340 339 Gene3D - 28 84 - -
Spst4g00340 339 Gene3D - 85 155 - -
Spst4g00340 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Spst4g00340 339 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Spst4g00340 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Spst4g00340 339 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Spst4g00340 339 SMART sant 30 80 IPR001005 -
Spst4g00340 339 SMART sant 83 131 IPR001005 -
Spst4g00340 339 MobiDBLite consensus disorder prediction 256 273 - -
Spst4g00340 339 Pfam Myb-like DNA-binding domain 84 128 IPR001005 -
Spst4g00340 339 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00340 Spst-Chr4 3974142 3976406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00340 1 339 MYB Transcription Factor Family AT3G08500 49.176 7.79e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00340 Myb_DNA-binding 5.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00340 K09422 - gmx:100813660 540.036