Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00329 ATGGTTTACCAAACTGATTTAGTTATCATTGGTGTTTCTGCTGGTTTGGCCCTTGGAATTCTGATATCATGCCTCATATTTTTTGGCATAAGGTGGTACAAGAAACGTGCTGCTCATCTTAGACTATCTGCAAATGATTCTAGTGGAACAACTCTTCCAATACGAACAAATGGGTTGGGAACAAGTACGGACTTTAGTGCATCACTAAATAGTTCCATAGCCACATCAAGGTCAGACAATCTTAAGAAAAATTCCCATTTCAATTGGTGGAGTCATAAAAACAAAGACCGGTTTGCGTCAGCATCAGGCATTCCAAAGTATTCATACAGAGAAATTCAAAAGGCCACACAGAATTTCACGACAACCTTGGGACAAGGATCATTTGGGACAGTTTATAAAGCGACAATGCCTACAGGGGAGGTTGTAGCAGTGAAGGTGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTATTTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGGCAACGCATACTGGTTTATCAGTACATGAGTAAAGGAAGTTTAGCAAATCTTTTATATGGTGAAGAAAAGGGATTGAGTTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCACATGGAATAGAATACCTTCACGAAGGAGCAATCCCACCTGTTATACACCGTGATTTAAAGTCTGCCAACATATTGCTAGATCACTTAATGAGAGCTAAGGTTGCCGATTTTGGACTCTCAAAAGAGGAGATCTTTGATGGCCGGAATTCTGGTCTCAAAGGTACATATGGCTACATGGATCCCGCATACATTTCCACAAGCAAGTTAACAATGAAGAGTGACATATACAGTTATGGTATCATAGTGTTTGAGCTCATCACTGCTATCCACCCTCATCAAAATTTGATGGAGTATGTTAACCTTGCTGCAATGGATCATGATGGTGTAGATGAGATACTTGACAAGCAACTAGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAACTTGCTAAGATCGGACATAAATGCTTGCACAAATCACCTAAGAAACGCCCCTCCATAGGTGAGGTTTCTCAGCTCATATCAAGAATAAAGCAAAGGCGACAGCGCTGTCTGACAGAAGATAACTTGTCATTTGCAAGCACCAACTTTTCTCGAGCTGTGAGTCGATTAGAAGATCGACAGGTTGAACTTGGCAGGATGTCAACCATTAGCCTCACAGAAACTGTATGA 1278 0.4108 MVYQTDLVIIGVSAGLALGILISCLIFFGIRWYKKRAAHLRLSANDSSGTTLPIRTNGLGTSTDFSASLNSSIATSRSDNLKKNSHFNWWSHKNKDRFASASGIPKYSYREIQKATQNFTTTLGQGSFGTVYKATMPTGEVVAVKVLAPNSKQGEKEFQTEVFLLGRLHHRNLVNLVGYCVDKGQRILVYQYMSKGSLANLLYGEEKGLSWDERLQIALDISHGIEYLHEGAIPPVIHRDLKSANILLDHLMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTMKSDIYSYGIIVFELITAIHPHQNLMEYVNLAAMDHDGVDEILDKQLVGKCNLEEVRQLAKIGHKCLHKSPKKRPSIGEVSQLISRIKQRRQRCLTEDNLSFASTNFSRAVSRLEDRQVELGRMSTISLTETV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00329 425 Gene3D Phosphorylase Kinase; domain 1 90 192 - -
Spst4g00329 425 ProSiteProfiles Protein kinase domain profile. 117 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00329 425 Pfam Protein kinase domain 121 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00329 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 193 402 - -
Spst4g00329 425 Gene3D Transferase(Phosphotransferase) domain 1 193 401 - -
Spst4g00329 425 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 382 - -
Spst4g00329 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 91 192 - -
Spst4g00329 425 CDD STKc_IRAK 123 379 - -
Spst4g00329 425 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524
Spst4g00329 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Spst4g00329 425 SUPERFAMILY Protein kinase-like (PK-like) 88 374 IPR011009 -
Spst4g00329 425 SMART serkin_6 117 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00329 Spst-Chr4 3805106 3807998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00329 103 376 Receptor kinase-like Gene Family AT3G19300 42.756 2.68e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Spst4g00329 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00329 - - gmx:100819995 768.844