Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00318 ATGGGAAGAGGGAGAGTTCAGCTGAAGCAGATCGAGAACAAAATCAGTCGCCAAGTCACCTTCTCCAAAAGGAGAACGGGGCTGCGCAAGAAGGCTCATGAAATCTCTGTGCTCTGTGATGCTCAAGTCGCACTGATTGTCTTCAATGCCAAAGGGAAACTCTTTGAGTATTCGTCTGAATCCAGGATTCCATCTCTTGCACCAGGTCCCTTTGGTGAATTGATGTCTAACAAGTATGTACGGCCATGGAGGGCCCTCTCTGACAAGGCAACAGGTGCTGCCATATGTTCATGTTTTAGGCAACGCGTTGTAGTGTTCTGA 321 0.4829 MGRGRVQLKQIENKISRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNAKGKLFEYSSESRIPSLAPGPFGELMSNKYVRPWRALSDKATGAAICSCFRQRVVVF 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00318 106 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Spst4g00318 106 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Spst4g00318 106 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst4g00318 106 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Spst4g00318 106 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst4g00318 106 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst4g00318 106 FunFam MADS-box transcription factor MADS-MC 13 67 - -
Spst4g00318 106 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 76 - -
Spst4g00318 106 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst4g00318 106 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst4g00318 106 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst4g00318 106 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00318 Spst-Chr4 3689266 3692871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00318 1 61 MADS-box Gene Family AT1G26310 85.246 1.15e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst4g00318 SRF-TF 8.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00318 K09264 - gmx:100787971 117.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00318 4 3689266 3692871 Spst1g01469 1 18381993 18389649 PCT