Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00305 ATGAGGCTTGTCTTCTCAGCTCTTTCTGTTCTTGTGTTATTCTCTTGTGTAGTTGCTTATGATCCTTTGGATCCAAACGGAAACGTGACAATCAAATGGGATGTTATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACAGTTCACAATTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCCAAGAGAGAAGTGATTTGGTCCATGGTAGGAGCTCAGGCCACAGAGCAAGGTGATTGCTCTAAGTTCAAAGGCAACATACCTCATTGCTGCAAGAAAATTCCTACAGTTGTAGACCTGCTCCCTGGTGTTCCTTACAACCAGCAATTCTCAAACTGCTGTAAGGGTGGAGTGGTGGCTGCATGGGGCCAAGATCCTTCACAAGCTATCTCATCCTTCCAACTGAGTGTAGGCCAAGCTGGTACCACAAACAAGACAGTTAAACTCCCCAAGAATTTCACTCTCTTGGCTCCTGGACCAGGCTATTCTTGTGGCCCTGCCAAGATAGTTCCTTCCACCACTTTCCTTACGCCTGACAAGCGCCGCAAGACTCAAGCTCTAATGACATGGAATGTTACCTGCACATACTCACAGTTCCTGGCAAGAAAGAACCCAAGTTGTTGTGTATCTTTGTCATCCTTCTATAATGAAACCATTACCCCTTGTCCTTCTTGTGCCTGTGGCTGCCATAACAAGAAGAATTGTGTCAAGAGTGACTCCAAAATTCTCAGCATGGTGGGTGTTCACACTCCCAAGAAAGACAATGAACCCTTGCTGCAGTGCACTCATCACATGTGTCCAATCAGGGTTCACTGGCACGTGAAGGTTAACTATAAGGAATATTGGAGAGTCAAGATTGCCATAACAAACTTCAATTACAGGATGAATCACTCCCTCTGGTCTCTTGCTGTTCAGCATCCAAATCTTAACAATCTCACCCAAGTTTTCAGTTTCAATTACAAGCCTCTTCTTCCCTATGGTTCAATTAATGACACTGGCATGTTCTATGGCATGAAATACTTCAATGATCTTCTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAGCTGCTTCTTCAAAAGGACAAGGATACATTCACATTCAAGCAGGGTTGGGCTTTTCCTCGCAAGGTCTACTTTAATGGTGATGAATGCATGATGCCCCCACCTGACACCTACCCGTTTCTACCTAACTCTGCACCTGCAAGCCTCATTACCTTCCCAGCATTCACTTTCTTATTGCTTTTCTTGTTAGCAGTTTGGTGA 1296 0.4498 MRLVFSALSVLVLFSCVVAYDPLDPNGNVTIKWDVMSWTPDGYVAVVTVHNFQMFRHIMNPGWTLGWTWAKREVIWSMVGAQATEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQAISSFQLSVGQAGTTNKTVKLPKNFTLLAPGPGYSCGPAKIVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCHNKKNCVKSDSKILSMVGVHTPKKDNEPLLQCTHHMCPIRVHWHVKVNYKEYWRVKIAITNFNYRMNHSLWSLAVQHPNLNNLTQVFSFNYKPLLPYGSINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKDTFTFKQGWAFPRKVYFNGDECMMPPPDTYPFLPNSAPASLITFPAFTFLLLFLLAVW 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00305 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0016020
Spst4g00305 431 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Spst4g00305 431 PANTHER PROTEIN COBRA 9 422 IPR006918 GO:0010215|GO:0016020
Spst4g00305 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00305 Spst-Chr4 3527553 3529941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00305 1 427 COBRA Gene Family AT3G29810 67.198 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00305 - - gmx:100798678 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00305 4 3527553 3529941 Spst1g01457 1 18235302 18238456 PCT
Spst1g01458 1 18239120 18241143 Spst4g00305 4 3527553 3529941 PCT