Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00304 ATGGCGCAAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGTTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAATTTCCAACAATATCGTCATATCTCAGCACCTGGGTGGTCGTTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAGCATGGTGGGAAGTCAGGCCATTGAACAAGGGGATTGCTCAAGATTTAAGGGAAACGTCCCACATTGCTGTAAAAAAGACCCAACAGTTGTAGATTTACTTCCAGGAACACCTTACAATCAACAAATTGCAAACTGCTGCAAAGGTGGTGTACTCAGCTCATGGGCTCAGGATCAATCCAAAGCAGTTTCTGCCTTTCAAGTCAGTGTAGGTAGTGCTGGTACCACTAACAAAACTGTCAAACTGCCAAAAAATTTCAACTTGAAAGCACCAGGACCCGGTTACACATGTAGCCCTGCAAAAATCGTGCAACCAACTGAATTCATACAACCAGACAAAAGAAGAGTGACCCAAGCACTTATGACATGGAATGTGACATGCACATATTCACAATTTCTTGCTCAGAGAACGCCTACTTGCTGCGTCTCGCTCTCATCTTTCTATAATGATACTGTTGTACCCTGCCCTACATGTGCATGTGGCTGCCAGGGCAACTCATCACAAACAGGGGACTGTGTAAATCCAGATTCACCACATCTGGCTTCAGTTGTTTCTAACCCTGGGCCTGGGAAAAGTAGTATTACACCTTTGGTTCGATGTACTCGGCATATGTGCCCGATCAGAGTTCACTGGCATGTGAAGCTTAACTACAAGGAGTACTGGCGCGTGAAGGTCACTGTTACTAATTTCAATTACAGGATGAATTATTCTGATTGGAACTTGGTCATTCAGCATCCAAACTTTGACAATCTTACTCAGCTTTTCAGTTTCAACTACCGGGCAATAACTGCCTACGGATCAATAAATGATACAGCAATGCTTTGGGGAGTTAAGTTCTACAATGATTTTCTCATGCAAGCTGGTTCTCTTGGTAATGTTCAGTCAGAGCTACTATTCAGAAAAGATAAATCAACTTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGTGACGTTTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCTAATGCTGGTTCCAGGCAAGAGGTTTCCCTGCTTGCTTTGATGATGACCTCTTTGGTGGCCTTGGTATTACATGCATATGCTTAA 1278 0.4319 MAQAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHISAPGWSLGWTWAKKEVIWSMVGSQAIEQGDCSRFKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDQSKAVSAFQVSVGSAGTTNKTVKLPKNFNLKAPGPGYTCSPAKIVQPTEFIQPDKRRVTQALMTWNVTCTYSQFLAQRTPTCCVSLSSFYNDTVVPCPTCACGCQGNSSQTGDCVNPDSPHLASVVSNPGPGKSSITPLVRCTRHMCPIRVHWHVKLNYKEYWRVKVTVTNFNYRMNYSDWNLVIQHPNFDNLTQLFSFNYRAITAYGSINDTAMLWGVKFYNDFLMQAGSLGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDVCVMPPPDAYPWLPNAGSRQEVSLLALMMTSLVALVLHAYA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00304 425 PIRSF COBRA 1 425 IPR006918 GO:0010215|GO:0016020
Spst4g00304 425 PANTHER PROTEIN COBRA 2 415 IPR006918 GO:0010215|GO:0016020
Spst4g00304 425 Pfam COBRA-like protein 28 191 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00304 Spst-Chr4 3522891 3526096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00304 2 423 COBRA Gene Family AT3G02210 74.408 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00304 - - gmx:100815926 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00304 4 3522891 3526096 Spst1g01456 1 18228891 18231658 PCT
Spst1g01457 1 18235302 18238456 Spst4g00304 4 3522891 3526096 PCT