Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00293 ATGAGTTTCTTCAGTTCCACCACCACCTTAACACTACTCTTCTTCCTTCTGCACTTCTCCATACACCTAAAGGCCTACACCCCAGATGAAATTTTCACCATCAGTTGCGGCACCACCGGAAAATCCTCCGACGGTGAAAGGACGTGGACCGGGGACGCAGACACAAAGTACTTATCTCTCCAAGACGGCACCGTTTCGGACAAGGCAACAACACAGTCTCCTTCCACGAATCAAGTACCCTTCACCACAGCACGCTTGTCTCGTTCCCAATTCAATTACTCCTTCCCCGTCTCCGCAGGCTCCAAATTCATTCGTCTCTTTTTCTACCCTGCCGATTACCCTTCCTTTCCCCGCAACCACGCTTCTTTCACCGTTCAATCCAACCAATTCACGCTCCTCAACGGTTTCAACGCCTCTCTAAACGCCGACGCTGAAAACACCGAAACTATCTTCAGAGAATACGTGATCAACGTCAACGACGGTGACAGGCTTATCCTCAGCTTCACTCCCTCGCAACCAAACTCCTACGCTTTCGTCAACGGAATCGAGGTACTTTCCATGCCAACCGATTTATATTACACCCCAGCCAATGAGACAGGAATTACGTTCTTGGGAAGTAGCACTTTGTACAGTATTGGAACCAGTTTTGCGCTTCAGACAGAGTATAGAATCAAAAGTGGAGGGCAACAAATCCCGCCACAAAACGACACCGGTTTGTTCAGGAAATGGGATGATGAAGAAAGTCATTTTATTAAACAAAATCCAAACAATGATGATCTACCAGGTGACATATATGGGAAGATGAACATAACAGTGAATCCTGATTACGTGGCACCCAAGGAACTGTTCAGAACAGCGCGTAGCATGGGCAGAAACGCCACCCTGAACATAATCAGCAACCTCACTTGGGAGTTTCCCGTTGATTATGGCTTCACTTATGTCCTCAGGCTCCACTTTTGCGAGCTTGATCCCCACATTAATGACTTCGGTGACAGAGTGTTCTCCATTTACATAGCGAGTCAGTTGGCTGAATATCATGCTGACGTAATGTTATGGAGCCAGAAACAAAAAGGTGTCGCTGTGCACAGAAACTACGCCGTTTTGATTCCCAAGAATGATACTAAGAAAAAGTTTAATCTCTCGCTTCAAATGCATCCTCATGGAAGTGGTTGGGTGTCGAAATACGCCGACGCGTTCTTGAATGGTCTCGAGATCTTCAAAATCAGCGAGGCCGGCTCAAACAACCTCGCCGGACCAAACCCGGACCCAGTTCAGACTCCACTCAGCAACATGCCCGTTCAAAACCGAAAGGCCAGCAAAGGAAAGACGTTAGTTGTTGTCGTCGCAGAGGTGCTAATCGGTGTCATTTTTATCTCTGTTGTCATTTTGTTCGTCGTTTTCTTCCGATGCAAGAGAACCACTAAAATGAATCCCAAGGATTACAAATCCAAGTCGTTCACTAGCACACAGAAAGCTTCCTTGCCGTCAAATCTCTGCCGGAGTTTCTCTCTCGTCGAGGTGGAAGCCGCCACCAACAACTTCGACGAGGTCCTCATCGTCGGAGCAGGAGGATTCGGCCACGTGTACAAGGGCTACATCGATGGCGGTTCCATCCCCGTCGCCATCAAGCGTCTCAAACCGGATTCACAGCAGGGTGCGCACGAGTTCTTGAACGAGATCGAGATGCTCTCTCAGCTCCGCCACCTTCATCTCGTGTCCCTAATCGGATACTGCAACGAGAACAACGAGATGATCCTGGTCTACGACTTCATGGCGCGTGGCACCCTACGCGATCATCTCTACCATACTGATAACCCCCCTCTTTCGTGGAAGCAGCGTTTGCAGATATGCATTGGCGCGGCGCGTGGGCTGCATTATCTCCACACAGGCGCGAAGCACACGATCATCCACCGCGACGTGAAAACCACGAACATCTTGTTGGATGAAAAATGGGTGGCGAAGGTTTCTGACTTCGGGCTTTCAAGAATTGGGCCCAGCGGGACGGACAAGGCCCACGTGAGTACCGCAGTGAAGGGAAGCTTTGGGTATCTAGATCCGGAGTACTACAAACGTTATCGCTTGACGGAAAAGTCTGACGTGTACTCATTCGGAGTGGTGTTGTTTGAGATATTGTGTGGTCGACCACCTCTGATACGAACGGCGGAGATGAAACAGGCCTCGCTGTCTACTTGGGTGAGACATTGTGACCAAAATGGGAGCATGGAAGAGATTGTGGACCCCACGTTGAAGAAGAAGATTGCGCCGGAGTGCTTGAAGAGGTTTTGTGAGATTGGGGTGAGTTGTTTGTCGGAAGATGGGACGCAGAGGCCGTCTATGAAGGACTTGGTTGGGTTGCTGGAATTTACGGCGCAGCTACAAGAGAGTGCAGAGCAACGTGAAAGTGAGGAAGGAGAAGAAATTAGCGAGGATATCTTTACCACTGAGGTGAGTGTGACTTCGACTTCGACCAGTGAAGACAATAGCTGTGGGAAGAAGGATAATTATAATACGTCCTTGTCTTGGATTCCTTTCTCGGAGATTATGGATCCCAACCCGCGTTAA 2562 0.4918 MSFFSSTTTLTLLFFLLHFSIHLKAYTPDEIFTISCGTTGKSSDGERTWTGDADTKYLSLQDGTVSDKATTQSPSTNQVPFTTARLSRSQFNYSFPVSAGSKFIRLFFYPADYPSFPRNHASFTVQSNQFTLLNGFNASLNADAENTETIFREYVINVNDGDRLILSFTPSQPNSYAFVNGIEVLSMPTDLYYTPANETGITFLGSSTLYSIGTSFALQTEYRIKSGGQQIPPQNDTGLFRKWDDEESHFIKQNPNNDDLPGDIYGKMNITVNPDYVAPKELFRTARSMGRNATLNIISNLTWEFPVDYGFTYVLRLHFCELDPHINDFGDRVFSIYIASQLAEYHADVMLWSQKQKGVAVHRNYAVLIPKNDTKKKFNLSLQMHPHGSGWVSKYADAFLNGLEIFKISEAGSNNLAGPNPDPVQTPLSNMPVQNRKASKGKTLVVVVAEVLIGVIFISVVILFVVFFRCKRTTKMNPKDYKSKSFTSTQKASLPSNLCRSFSLVEVEAATNNFDEVLIVGAGGFGHVYKGYIDGGSIPVAIKRLKPDSQQGAHEFLNEIEMLSQLRHLHLVSLIGYCNENNEMILVYDFMARGTLRDHLYHTDNPPLSWKQRLQICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSRIGPSGTDKAHVSTAVKGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEILCGRPPLIRTAEMKQASLSTWVRHCDQNGSMEEIVDPTLKKKIAPECLKRFCEIGVSCLSEDGTQRPSMKDLVGLLEFTAQLQESAEQRESEEGEEISEDIFTTEVSVTSTSTSEDNSCGKKDNYNTSLSWIPFSEIMDPNPR 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00293 853 SMART serkin_6 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00293 853 Pfam Protein tyrosine and serine/threonine kinase 520 784 IPR001245 GO:0004672|GO:0006468
Spst4g00293 853 FunFam FERONIA receptor-like kinase 31 188 - -
Spst4g00293 853 SUPERFAMILY Protein kinase-like (PK-like) 487 789 IPR011009 -
Spst4g00293 853 FunFam Receptor-like protein kinase FERONIA 486 590 - -
Spst4g00293 853 FunFam FERONIA receptor-like kinase 216 409 - -
Spst4g00293 853 PANTHER OS03G0124300 PROTEIN-RELATED 8 481 IPR046957 GO:0004672
Spst4g00293 853 Pfam Malectin-like domain 34 408 IPR024788 -
Spst4g00293 853 ProSitePatterns Protein kinases ATP-binding region signature. 520 543 IPR017441 GO:0005524
Spst4g00293 853 Gene3D Transferase(Phosphotransferase) domain 1 591 815 - -
Spst4g00293 853 Gene3D - 217 409 - -
Spst4g00293 853 Gene3D - 29 188 - -
Spst4g00293 853 FunFam Receptor-like protein kinase FERONIA 591 808 - -
Spst4g00293 853 CDD STKc_IRAK 520 787 - -
Spst4g00293 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Spst4g00293 853 ProSiteProfiles Protein kinase domain profile. 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00293 853 Gene3D Phosphorylase Kinase; domain 1 473 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00293 Spst-Chr4 3283773 3286334 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00293 21 833 Receptor kinase-like Gene Family AT3G51550 47.393 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Spst4g00293 Malectin_like 1.3e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00293 - - var:108344516 1261.51