Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00276 ATGAAGTTGCAGCTGCCAAGTGCTAGCCATAGCCTGCAGACACTGCTGCATTCTGGTTATTCAGAAGTGACTCAGTTTTTGGTCATCACCCAGTTTTCTCAGAACCCTCTTGAGAGGCCCCTCACTATACTTGATTATTGTCAACTTGGATATTTACACTGTGGAAGAGAAGATAGAGGAAGGAAAACCAATTACAACTATGAAAGAAAGACAATGATCAATAGTACTAAAGAAGCAGATTTTCCACTAAAGCAAGAAGGTCTTTCTTCAAGTGATCATGAAAAGGCAAAGGCTTCATCGAGCTCATCCTCCCAATGGCTGAAATTGAAGGATCCAAGGATTGTTCGTGTGTCTCGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTGTGCACAGTAAGAGGACTAAGAGATAGGAGGGTGAGGCTTTCAGTGCCAACAGCAATTCATCTCTATGATCTCCAAGATAGGCTTGGACTCAATCAACCTAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCAAAGCATGAAATTGATGATCTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCATCTCTTGTTGCTTGTAATGAAGTTAGCACCTATCGTGAAGGTTCAGGCCAAAACAACAACACTTCATGGAAATCCAGGTCAGGAGAAATGGTTAGTGATAAGGCAAATTGGTTAAATAGAAGCGAAGAGGATGATGATAATAATAATGATAATACTAATAGAAATAGTAATGACGGTGGTGATAATAAACATTGCCATGGTGCACATGCTTTGCCAAATAATCTCTTACCAAGACCAAACCATCCTTCCTTTTTGGGCTTGATGAACACCATGCCATCTCTTGGTTACCAATGGGAGCATAATTCAGGCGATGTTGCTCAATGGGAAAATCATGGATTTGTTAACCAAACAGATATACACAGCATTAATGTAGTTCCAATCCCATCAACTTTGGCTCTATCAACTGGGAGCACTACTCCTCAAATTTTGGTGTGTCCTCCTGGAGCAACACAACCATATTTCCCATCCCATGTTGCAGCAATGGACATGAATGCAAGACAAATCAACCACTATCAGATGCTGACTTCAGGTTCTCAAAATCTCTTGGCAAATTCTCTCAGTTCATCATCACAACATCTCATGAACCAATCTGGGAAAGTGCCATTCAGCTTGGTTAGGCCTAAACTTTTCCATTCTCCTAGCAGCAGTGAAAGCCATCCCCGTCATAAAGATCAGGGTTTTCCTTCCAAGTGA 1281 0.42 MKLQLPSASHSLQTLLHSGYSEVTQFLVITQFSQNPLERPLTILDYCQLGYLHCGREDRGRKTNYNYERKTMINSTKEADFPLKQEGLSSSDHEKAKASSSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDDLPPLPIPPGNFTLGYPSLVACNEVSTYREGSGQNNNTSWKSRSGEMVSDKANWLNRSEEDDDNNNDNTNRNSNDGGDNKHCHGAHALPNNLLPRPNHPSFLGLMNTMPSLGYQWEHNSGDVAQWENHGFVNQTDIHSINVVPIPSTLALSTGSTTPQILVCPPGATQPYFPSHVAAMDMNARQINHYQMLTSGSQNLLANSLSSSSQHLMNQSGKVPFSLVRPKLFHSPSSSESHPRHKDQGFPSK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00276 426 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 88 393 IPR005333 GO:0003700
Spst4g00276 426 MobiDBLite consensus disorder prediction 411 426 - -
Spst4g00276 426 MobiDBLite consensus disorder prediction 405 426 - -
Spst4g00276 426 ProSiteProfiles TCP domain profile. 123 181 IPR017887 -
Spst4g00276 426 Pfam TCP family transcription factor 123 248 IPR017887 -
Spst4g00276 426 MobiDBLite consensus disorder prediction 206 230 - -
Spst4g00276 426 MobiDBLite consensus disorder prediction 232 261 - -
Spst4g00276 426 MobiDBLite consensus disorder prediction 206 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00276 Spst-Chr4 3070484 3075846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00276 106 193 TCP Transcription Factor Family AT3G02150 82.955 1.65e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst4g00276 TCP 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00276 - - aprc:113867214 479.559