Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00271 ATGTTTTCTTCTTCTTTTTCTCATTGCAGCTCGGTGATCAAATGGAATTCCCTCATGCAGTTTCTCTTCCTCGTCTTCGTGCTTCTCTTCTCGTCGCGAAGCGACGCCCTTTCGACCGATTCGGACGAATCCGTACTCCTCCGCCTGAAGGCATCATTCTCAGACCCCGCCGGCGTTCTCTCCACATGGACCTCCGCCGACGGTGGTGAATCCAGCCACTGCTCCTGGTCCGGCGTTCTCTGTGATGCGAACTCCCGCGTCGTCACCGTCAACTTTACCGGAAACGGCGGCGACCGAACCTCTCAACCGTGCGCTGGTTTCACTCAATTCCCCCTTTACGGATTCGGAATTCGACGGACATGCAAAGGTAGTAAAGGTTCTCTCTTTGGAAACGTTTCTTCTTTTAATTTCATCAGCGAGCTCACTGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGTGAAATTCCCGAAGCGATTTGGGGTTTGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATTTGATAAGTGGCTATCTTCCCTTGAGAATTAACGGCTTGAGGAAGTTGAGGCATCTGAATCTTGGGTTTAATAGGATTGTTGGGGAGATTCCTAGTTCCATTTCGACTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTGTCGTTTAATCAGTTTAGTGGGGTTATTCCGAGAGAGATTGGGGACAATTGTTGGAAGCTTGAGCATTTAGATTTGTCGGGGAATTCGTTGATTCAAGGGATTCCGGTGAGTTTGGGGAATTGTGGGAAGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGCTATTCCTGGTGAACTTGGGAAGCTTAAGAGCCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGCTCTGTGCCGATGGAGCTTGGGAATTGCTCAGAGTTGTCGGTTCTCGTGCTGTCAAATCTCTTCGATGTGCGCGGGTATGCTGCCGGTGATTTCGGGAAATTGGGTTCAGTGAATGATGAGGTGAATTATTTTGAAGGGTCAATGCCAGTGGAGGTTTTATCACTTCCGAAGTTGAGGATATTGTGGGCTCCCATGGTGAATTTGGAAGGCAGTTTTCAGGGGAATTGGGGTGGTTGTCAGAGCTTGGAGATGGTCAATTTAGCTCAGAATTTTTTCAGTGGGGAGTTTCCAAACCAGCTCGGTGTCTGCAAGAGGTTGCATTTTCTTGATTTAAGCGGAAACAACCTTACTGGGGTTCTTTCTAAACAACTTGGCGTTCCCTGTATGAGCGTGTTTGATGTTAGTGGGAACATGTTATCTGGTGCAATTCCTGATTTCTCCGATACTGTTTGCCCCCCTAAACCTTATTGGAATGGAAACCTGTTTGAAGATGGCGATGTTTCTCCTCCATATGCATCCTTTTTTTCGTCAAAAGTTGGTGATATTTCACTTTTCAAAGCAATGGGGGGAGTTGGTATTTCAGTTGTTCACAACTTTGGTCGAAACAGCTTTAGTGGGATTCTATCGTTACCTCTGGCACGCCACAAGCTGGGGAAGCAGAGTGCTTACACATTTCTGGTTGGTGAAAATAATCTTACCGAACCATTTCCTACATATTTATTTGAGAAATGTGATGGATTAGATGCATTGCTTTTAAATGTAAGTTATAATAGGATATCTGGTGATATTCCTTCCAATTTCGGTGGAATTTGCAAATCATTGAAATTTTTGGATGTGTCTGGAAATCAACTTGCAGGACCGATTCCCTTTGATTTGGGGAATTTGGTCTCCCTTGTATCGCTGAACCTTAGTAGGAATCAGTTGCAAGGTCAGATTCCCACCAGCCTTGGCCAGATGAAGAATCTGAAATTTCTTTCTTTGGCTGGTAATAAGTTAACTGGCCCAATTCCGATCAGTCTGGGGCAGTTGTACTCTTTGGAAATCTTGGACCTTTCTTCAAACTATCTTACTGGTGAGATTCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTGATGGTTTAGCATATGTCACTACACTCTCAGCATTCAATGTGTCCTTCAACAACTTATCTGGATCGTTGCCTTCAAATAGTGGCTTGATTAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAATTCCCTGTCGCGGAGTTTCTCTATCTGTCCCATCAGGGAGTCAACTAGGGCCGATTGATGCAAACTCTTATAATTCGGCATCAGAGCAAACTACTGGCAAGCAGACGGGGAACGGCTTGAGTTCTATTGAAATAGCATCTATAACTTCCGCTTCAGCCATTGTTTCAGTTCTTATAGCCCTGATTGTTCTATTCTTTTACACTCGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGTTCTACACGAAAAGAAGTTACAGTGTTCACTGATATTGGGGTCCCATTGACGTTTGAAACTGTTGTCCAAGCCACTGGAAATTTCAATGCTGGCAACTGTATTGGGAATGGAGGTTTTGGGGCAACATATAAGGCAGAGGTATCACCAGGAATCCTGGTGGCAGTCAAACGACTCGCAGTTGGACGTTTCCAAGGTGTCCAACAATTCCATGCTGAAACCAAGACCCTTGGGAGGCTTCACCATCCAAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGGGAATCTGGAAAAGTTTATCCAAGAGAGGTCCACAAGGGTTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTCGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTCAAACCCAGCAACATCTTGTTGGATGATGATTTCAATGCCTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAGACACATGCTACTACTGGTGTAGCGGGAACGTTTGGGTATGTTGCTCCTGAATATGCCATGACTTGTCGTGTTTCTGATAAAGCTGATGTTTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCTTATGGGAATGGGTTCAACATAGTGGCATGGGCGTGCATGCTTCTGAAGCAAGGGAGGGCAAAGGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCCGGAGATGATCTGGTGGAGGTGCTTCACTTGGCTGTTGTGTGTACTGTTGACTCTCTCTCTACCAGACCTACCATGAAACAAGTTGTAAGAAGGCTTAAGCAACTTCAACCCCCATCATGCTAG 3405 0.4543 MFSSSFSHCSSVIKWNSLMQFLFLVFVLLFSSRSDALSTDSDESVLLRLKASFSDPAGVLSTWTSADGGESSHCSWSGVLCDANSRVVTVNFTGNGGDRTSQPCAGFTQFPLYGFGIRRTCKGSKGSLFGNVSSFNFISELTELRVLSLPFNALEGEIPEAIWGLEKLEVLDLEGNLISGYLPLRINGLRKLRHLNLGFNRIVGEIPSSISTLESLEVLNLAGNELNGSVPGFVGRLRGVYLSFNQFSGVIPREIGDNCWKLEHLDLSGNSLIQGIPVSLGNCGKLRTLLLYSNLLEEAIPGELGKLKSLEVLDVSRNTLSGSVPMELGNCSELSVLVLSNLFDVRGYAAGDFGKLGSVNDEVNYFEGSMPVEVLSLPKLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFFSGEFPNQLGVCKRLHFLDLSGNNLTGVLSKQLGVPCMSVFDVSGNMLSGAIPDFSDTVCPPKPYWNGNLFEDGDVSPPYASFFSSKVGDISLFKAMGGVGISVVHNFGRNSFSGILSLPLARHKLGKQSAYTFLVGENNLTEPFPTYLFEKCDGLDALLLNVSYNRISGDIPSNFGGICKSLKFLDVSGNQLAGPIPFDLGNLVSLVSLNLSRNQLQGQIPTSLGQMKNLKFLSLAGNKLTGPIPISLGQLYSLEILDLSSNYLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAYVTTLSAFNVSFNNLSGSLPSNSGLIKCSSAVGNPFLIPCRGVSLSVPSGSQLGPIDANSYNSASEQTTGKQTGNGLSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGNGGFGATYKAEVSPGILVAVKRLAVGRFQGVQQFHAETKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRVVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLKQGRAKEFFTAGLWEAGPGDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00271 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 931 1133 - -
Spst4g00271 1134 Pfam Leucine Rich Repeat 667 689 IPR001611 GO:0005515
Spst4g00271 1134 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515
Spst4g00271 1134 Pfam Leucine Rich Repeat 261 283 IPR001611 GO:0005515
Spst4g00271 1134 SMART LRR_sd22_2 641 662 - -
Spst4g00271 1134 SMART LRR_sd22_2 141 167 - -
Spst4g00271 1134 SMART LRR_sd22_2 665 691 - -
Spst4g00271 1134 SMART LRR_sd22_2 189 215 - -
Spst4g00271 1134 SMART LRR_sd22_2 259 278 - -
Spst4g00271 1134 SUPERFAMILY L domain-like 40 344 - -
Spst4g00271 1134 CDD STKc_IRAK 861 1129 - -
Spst4g00271 1134 SUPERFAMILY Protein kinase-like (PK-like) 837 1126 IPR011009 -
Spst4g00271 1134 Gene3D Ribonuclease Inhibitor 38 237 IPR032675 -
Spst4g00271 1134 SMART LRR_typ_2 665 688 IPR003591 -
Spst4g00271 1134 SMART LRR_typ_2 261 283 IPR003591 -
Spst4g00271 1134 SMART LRR_typ_2 234 258 IPR003591 -
Spst4g00271 1134 SMART LRR_typ_2 617 641 IPR003591 -
Spst4g00271 1134 SMART LRR_typ_2 189 213 IPR003591 -
Spst4g00271 1134 SMART LRR_typ_2 689 713 IPR003591 -
Spst4g00271 1134 SMART LRR_typ_2 307 331 IPR003591 -
Spst4g00271 1134 SMART LRR_typ_2 141 165 IPR003591 -
Spst4g00271 1134 Gene3D Phosphorylase Kinase; domain 1 818 930 - -
Spst4g00271 1134 SMART serkin_6 855 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00271 1134 ProSitePatterns Protein kinases ATP-binding region signature. 861 883 IPR017441 GO:0005524
Spst4g00271 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 819 930 - -
Spst4g00271 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 357 532 - -
Spst4g00271 1134 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 237 1128 - -
Spst4g00271 1134 Pfam Protein kinase domain 858 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00271 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 975 987 IPR008271 GO:0004672|GO:0006468
Spst4g00271 1134 Gene3D Transferase(Phosphotransferase) domain 1 931 1131 - -
Spst4g00271 1134 PRINTS Leucine-rich repeat signature 665 678 - -
Spst4g00271 1134 PRINTS Leucine-rich repeat signature 428 441 - -
Spst4g00271 1134 Gene3D Ribonuclease Inhibitor 238 343 IPR032675 -
Spst4g00271 1134 Gene3D Ribonuclease Inhibitor 349 473 IPR032675 -
Spst4g00271 1134 Gene3D Ribonuclease Inhibitor 515 762 IPR032675 -
Spst4g00271 1134 SUPERFAMILY L domain-like 364 741 - -
Spst4g00271 1134 Pfam Leucine rich repeat N-terminal domain 40 82 IPR013210 -
Spst4g00271 1134 FunFam Leucine-rich repeat receptor protein kinase EMS1 663 743 - -
Spst4g00271 1134 ProSiteProfiles Protein kinase domain profile. 855 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00271 1134 FunFam LRR receptor-like serine/threonine-protein kinase 591 662 - -
Spst4g00271 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 237 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00271 Spst-Chr4 2995163 2998567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00271 40 1134 Receptor kinase-like Gene Family AT3G02130 64.490 0.0 1332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Spst4g00271 Pkinase 6.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00271 - - vum:124828178 1913.66