Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00270 ATGAAATTTCTCTTCCTCGTCTCCTTGGTTCTCTTTACGTCGGGAAACGACGCCGTTACGATCGATTCCGACAAATCTGCGCTCCTCCGTTTGAAGGCGTCGTTGTCCGACCCCGCCGGCGTTCTCTCCACGTGGAACTCCGCCACCGGCGCTGACTCCGGACACTGCTCCTGGTCCGGGGTCATCTGCGACGCGAACTCCCGCGTTGTCGCCGTCAATGTCACTGGAAACGGCGGCAACCGAACCTCGCACCCGTGCTCTGATTTTGCTAAATTCCCCCTCTACGGTTTCGGAATTCGGCGAGCATGCAAAGGTAGTAAAGGTTCTCTCTTTGGAAACGTTTCTTTGAACTTCAATTTCATCACCGAGCTCACGGAGCTTAGGGTTTTGTCTCTCCCATTCAACGCTTTGGAAGGGGAAATCCCCGAAGCAATTTGGGGAATGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATTTAATAAGTGGGAATCTTCCCTTCAGAATTAGCGGCTTGAGGAAGTTAAGGGTTCTGAATCTTGGATTTAATAGGATTATTGGGGAGATACCTAGTTCAATTGCGTCTATTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGAATTGAATGGTTCCGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTTTCATTTAATCAGCTCAGTGGGGTTATTCCGCGAGAGATTGGGGACAATTGTTGGAAGCTTGAGCATTTGGATTTTTCTGGGAATTTGCTGGTACAAGGGATTCCGGTGAGTTTGGGGAATTGTGGGAAGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGGTATTCCTGGTGAACTTGGGAAGCTTAAAAGCCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGCTCTGTGCCGATGGAGCTTGGGAATTGCTCAGAGTTGTCGGTTCTCGTGCTGTCAAATCTCTTTGATGTGCGCGGGTATGCTGCCGGTGATTTCGGGAAATTGGGTTCAGTGAATGATGAGGTGAATTATTTTGAAGGGTCAATGCCAGTGGAGGTTTTTTCACTTCCGAAGTTGAGGATATTGTGGGCTCCCATGGTGAATTTGGAAGGCATTTTTCAGGGGAATTGGTGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAATTTTTTCAGTGGGGAATTTCCGAACCAGCTTGGCGTTTGCAAGAGGCTGCATTTTCTTGATTTAAGTGGAAACAACCTTACTGGGGTGCTTTCTGAAGAACTACGCGTTCCCTGTATGAGCGTGTTTGATGTCAGTGGGAACATGTTATCTGGTTCAGTTCCTGATTTCTCCAATACCGTGTGTCTCCCTGTTCCTTTCTGGAATGGAGACCTGTTTGAAGATGAGAATGTTTCCTCCCCATATGCATCATATTTTTCGTCAATGGTTCATGGGAGATCTCTTTTCACATCAATGGGGGGAGTTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACTGGCATTCAGTCGCTACCCATATCCATACCACATGACAGGCTGGGGAAGAAGAACAGTTACACGTTCCTTGTCGGTGGAAATAATCTTACAGGATCATTTCCTACATATTTTTTTGAGAAATGTAATGGATTAGATGCATTGCTTTTAAATGTCAGTTATAATAGGATAGCTGGTCATATACCTTCCAATATTAGTGTACTGTGCAGATCATTGAAATTTATGGATGTGTCTGGAAATCAGCTTGCAGGACCGATTCCCGTTGATTTAGGGAGTTTGGTCTCTCTTGTATCGCTTAACCTCAGTAGGAATCAGTTACAAGGTGAGATTCCCACCAGCTTTGGCCAGATGAAGAATCTGAAGTTTCTTTCTTTGGCTGGTAATAAGCTAAATGGTTCAATTCCAACCAGCCTGGGGCAGTTGCACTCTTTGGAAGTCTTTGACCTTTCTTCAAACGCTCTTACTGGTGAAATTCCGAAGGCCATTGAGAACATGAGAAATCTGACTGATGTTTTACTCAATAACAACAATCTTTCTGGTCATATTCCTGATGGTTTGGCATATGTCACTTCACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGAGATTTGCCTTCCAATAGTGGCTTGTTTAAATGCAGCAGTGCTGTTGGGAATCCGTACCTAAGTCCCTGCCGCGGAGTATCTCTAACTGTACCATCAGGCAATCAGCCAGGGCCGATTGATAGCAACTCGGATAATACGGCATCAGAACAAACTGTTGGCAAGAAGAGTCGGAATGGCTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTTATTGCCCTGATTGTGCTATTCTTTTACGCACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGTTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACGTTTGAAAATGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATTGGGAGTGGAGGTTTCGGGGCAACATATAAGGCAGAGATATCAGCAGGAATCCTAGTCGCAGTCAAACGTCTAGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCTGAGATCAAGACCCTTGGGAGACTTCATCATCCAAATCTTGTCACTCTGATTGGCTATCATGCTTGTGAAACAGAAATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTCGAAAAGTTTATCCAGGAGAGGTCCACGAGGGCTGTAGACTGGAGAATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTCGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTCAAACCCAGCAACATCTTGTTGGATGATGATTTCAATGCCTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAGACACATGCTACTACTGGTGTAGCGGGAACTTTTGGGTATGTTGCTCCTGAATATGCCATGACTTGTCGTGTTTCTGATAAAGCTGATGTTTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCTTATGGGAATGGGTTCAACATAGTGGCATGGGCGTGCATGCTTCTGAAGCAAGGGAGGGCAAAGGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCCGGAGATGATCTGGTGGAGGTGCTTCACTTGGCTGTTGTGTGTACTGTTGACTCTCTCTCTACCAGACCTACCATGAAACAAGTTGTAAGAAGGCTTAAGCAACTTCAACCCCCATCATGCTAG 3360 0.4545 MKFLFLVSLVLFTSGNDAVTIDSDKSALLRLKASLSDPAGVLSTWNSATGADSGHCSWSGVICDANSRVVAVNVTGNGGNRTSHPCSDFAKFPLYGFGIRRACKGSKGSLFGNVSLNFNFITELTELRVLSLPFNALEGEIPEAIWGMEKLEVLDLEGNLISGNLPFRISGLRKLRVLNLGFNRIIGEIPSSIASIESLEVLNLAGNELNGSVPGFVGRLRGVYLSFNQLSGVIPREIGDNCWKLEHLDFSGNLLVQGIPVSLGNCGKLRTLLLYSNLLEEGIPGELGKLKSLEVLDVSRNTLSGSVPMELGNCSELSVLVLSNLFDVRGYAAGDFGKLGSVNDEVNYFEGSMPVEVFSLPKLRILWAPMVNLEGIFQGNWCGCQSLEMVNLAQNFFSGEFPNQLGVCKRLHFLDLSGNNLTGVLSEELRVPCMSVFDVSGNMLSGSVPDFSNTVCLPVPFWNGDLFEDENVSSPYASYFSSMVHGRSLFTSMGGVGTSVVHNFGQNSFTGIQSLPISIPHDRLGKKNSYTFLVGGNNLTGSFPTYFFEKCNGLDALLLNVSYNRIAGHIPSNISVLCRSLKFMDVSGNQLAGPIPVDLGSLVSLVSLNLSRNQLQGEIPTSFGQMKNLKFLSLAGNKLNGSIPTSLGQLHSLEVFDLSSNALTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAYVTSLSAFNVSFNNLSGDLPSNSGLFKCSSAVGNPYLSPCRGVSLTVPSGNQPGPIDSNSDNTASEQTVGKKSRNGFSSIEIASITSASAIVSVLIALIVLFFYARKWKPRSRVVGSTRKEVTVFTDIGVPLTFENVVQATGNFNAGNCIGSGGFGATYKAEISAGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLKQGRAKEFFTAGLWEAGPGDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00270 1119 ProSiteProfiles Protein kinase domain profile. 840 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00270 1119 MobiDBLite consensus disorder prediction 744 766 - -
Spst4g00270 1119 FunFam LRR receptor-like serine/threonine-protein kinase 576 647 - -
Spst4g00270 1119 SMART serkin_6 840 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00270 1119 Pfam Leucine Rich Repeat 174 194 IPR001611 GO:0005515
Spst4g00270 1119 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515
Spst4g00270 1119 Gene3D Phosphorylase Kinase; domain 1 803 915 - -
Spst4g00270 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 960 972 IPR008271 GO:0004672|GO:0006468
Spst4g00270 1119 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 262 1113 - -
Spst4g00270 1119 SUPERFAMILY Protein kinase-like (PK-like) 822 1111 IPR011009 -
Spst4g00270 1119 FunFam Leucine-rich repeat receptor protein kinase EMS1 648 727 - -
Spst4g00270 1119 CDD STKc_IRAK 846 1114 - -
Spst4g00270 1119 SUPERFAMILY L domain-like 219 719 - -
Spst4g00270 1119 ProSitePatterns Protein kinases ATP-binding region signature. 846 868 IPR017441 GO:0005524
Spst4g00270 1119 SMART LRR_typ_2 674 698 IPR003591 -
Spst4g00270 1119 SMART LRR_typ_2 626 650 IPR003591 -
Spst4g00270 1119 SMART LRR_typ_2 290 314 IPR003591 -
Spst4g00270 1119 SMART LRR_typ_2 172 195 IPR003591 -
Spst4g00270 1119 SMART LRR_typ_2 217 241 IPR003591 -
Spst4g00270 1119 SMART LRR_typ_2 602 625 IPR003591 -
Spst4g00270 1119 SMART LRR_typ_2 124 148 IPR003591 -
Spst4g00270 1119 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 220 330 - -
Spst4g00270 1119 Gene3D Transferase(Phosphotransferase) domain 1 916 1116 - -
Spst4g00270 1119 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 340 515 - -
Spst4g00270 1119 SUPERFAMILY L domain-like 115 258 - -
Spst4g00270 1119 SMART LRR_sd22_2 626 641 - -
Spst4g00270 1119 SMART LRR_sd22_2 650 676 - -
Spst4g00270 1119 SMART LRR_sd22_2 172 201 - -
Spst4g00270 1119 SMART LRR_sd22_2 124 139 - -
Spst4g00270 1119 SMART LRR_sd22_2 242 261 - -
Spst4g00270 1119 SMART LRR_sd22_2 148 167 - -
Spst4g00270 1119 Gene3D Ribonuclease Inhibitor 19 220 IPR032675 -
Spst4g00270 1119 Pfam Leucine rich repeat N-terminal domain 22 64 IPR013210 -
Spst4g00270 1119 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 916 1118 - -
Spst4g00270 1119 Pfam Leucine rich repeat 604 663 IPR001611 GO:0005515
Spst4g00270 1119 Pfam Protein kinase domain 843 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00270 1119 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 804 915 - -
Spst4g00270 1119 Gene3D Ribonuclease Inhibitor 221 326 IPR032675 -
Spst4g00270 1119 Gene3D Ribonuclease Inhibitor 481 734 IPR032675 -
Spst4g00270 1119 Gene3D Ribonuclease Inhibitor 333 459 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00270 Spst-Chr4 2988599 2991958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00270 4 1119 Receptor kinase-like Gene Family AT3G02130 63.462 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Spst4g00270 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00270 - - vum:124828178 1936.77