Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00239 ATGGCTGCCACAAAACCCCAACGCACTCCACAGGAAGTGGAGGACATTATCATCCGCAAAATCTTCCTCGTCTCTATAACGGAAATCGCTAACACAAGTGCAACAGATTCAAGAATCGTGTATTTGGAACCAACCGCTGCGGAGATTCTCAGCGAAGGGAAGGAGCTTCGCCTCTCGCGGGATTCCATGGAGAGGGTTTTGATCGACCGTCTCTCCGGGGACTTTTCTTCCTCCGCCGGAGAAGCCTGCGAGTCACCGTTCCAGTACCTCGTCGGATGCTACCACCGTGCGCACGAAGAGGGGAAGAAAATTGCGAACATGAAGGACAAGAGCTTGCGCTCGGAGATGGAGGCGGTGGTAAGGCAGGCCAAGAAGCTCTGTGTCAACTACTGCCGGATTCATTTAGCCAATCCCGAGCTCTTTCCGAGCCGGAATTCGACTGGTTCTAACACCGATTCGCCGTTGCTGCCGCTGATTTTTGCTGAGGTTGGTGGCGGAAGCGTGTTCGGGGCCGGTGGTGGAGGGGCCAAGAGTCCGCCGGGCTTTCTGGAGGAGTTTTTCAGGGACCCGGATTTTGACAGCTTAGACCTGATTCTAAAGGGGTTATATGAGGAGTTGAGAGGGAGTGTGATGAATGTGTCTGCTCTTGGGAATTTTCAGGATTCTCTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCGTTGGTGCCAAGTCGCTTGTGAATCACGAGTGGTGGATTCCCAAAGGGGTGTATGTGAATGGCCGCGCTATTGAAATGACCAGTATTTTGGGTCCCTTTTTCCATATTAGTGCTCTTCCTGATCAGGCGTTTTTCAAGGGCCAGCCTGATGTTGGTCTGTATGTTTACCATATGAACCCCAGTTCTGAGACTTATTTGGATGGGATAAGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCGGCTGATTTGTTATCTTCATTTTCCACTATCAAAACTGTCATGAACAACTTATATGATGGCCTAGCTGAAGTACTACTCATCCTTCTTAAAAGTACAGACACTCGGGAAAGGGTACTTGAGTATCTTGCAGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTCGACCCTATTACTTGTGCAAGTTCGGGCACATTTGTAAATCTCAGTGCTGTCATGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTGACAAAAAGGGATAAAATTGATGCAAAATATGTGCACTACTCAAATCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTGCTGAATGGCTTAATAGTAAAAACCAAGGTAAGACTGGGGCAACTAATCAATATAATGATGATCAGAAACGCTTACAACAATCCCAAGAGGCCAGTAGTTCTGGTAGTAGTAATGCTGGTGAGCTCTCAAATGAAAATTCTGCACGAGCTGAAAAGGCGAAATATTCATTTATTTGCGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAGCACTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTGTCCACACTTAAAGCCATGCAGGAGCGGGCACCCACTCCTCAGGCAGAATTGGAAATAAATAGACTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAACTATGTTATGAAGCTCAGATTTTGAGGGATAATACACTTATTCAAAATGCACTCTCCCTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGTTTCCAGATGCCACTACCATCAACTTGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTCTAATATTTGCATCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAATTTATGAACTTTATAATTATGTTCATGGCCAGCCCCGAATTTATCAAAAACCCATACCTAAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCTCGGAGGAGTGGCTCATCTGCTACAGCGACTCTATTTGAAGGCCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTGCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGGCATAATATTGCCGAACTTCTTGAATACCTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAGGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGGTCAATGATAGTATTTATCTTCTAGATGAAAGTCTGAAAAAAATTCTTGAGCTAAAAGAATTGGAGGCCGAGATGTCAAATACAGTTGAGTGGGAGCAACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCTTTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTCCTGCTGCAATTGGTGGGTCCCCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTAAAACAGATTGTGCACATATATGTTCATCTGGCTAGGGGTGACACGAATTCCATCTTCCCATCTGTCATCTCAAAAGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCCGATGTCCTTCACAGAATTGGTGAGGATGGGAGAATTATACAGGAATTTATTCAGCTTGGTGCTAAAGCTAAAGTTGCTGCTTCAGAGGCCATGGATGCTGAAGCTACTCTAGGGGAAATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATTTTGCCTTCTTCAAGGACAACTGTTGATCGCCCCGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCGTTCAACCGTTCTCATCTAACTGTGGATATGTTGATTCCCAATGATGAGCTAAAAGCAAGAATTGAGGAGTTTGTGAGGTGTCAACAAATGAAAAAACACGGTGAAGGACTAAGCCTACAGAGTAACAAGGCCACAATTCAGACTACAAATGGGGAAATGTTGATTGATTAG 3183 0.4427 MAATKPQRTPQEVEDIIIRKIFLVSITEIANTSATDSRIVYLEPTAAEILSEGKELRLSRDSMERVLIDRLSGDFSSSAGEACESPFQYLVGCYHRAHEEGKKIANMKDKSLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRNSTGSNTDSPLLPLIFAEVGGGSVFGAGGGGAKSPPGFLEEFFRDPDFDSLDLILKGLYEELRGSVMNVSALGNFQDSLRALLYLVRFPVGAKSLVNHEWWIPKGVYVNGRAIEMTSILGPFFHISALPDQAFFKGQPDVGLYVYHMNPSSETYLDGIRQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSTDTRERVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKLSGLTALHASSEEVAEWLNSKNQGKTGATNQYNDDQKRLQQSQEASSSGSSNAGELSNENSARAEKAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQERAPTPQAELEINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSLYRLMIVWLVGLVGGFQMPLPSTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLVNDSIYLLDESLKKILELKELEAEMSNTVEWEQRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPSVISKDGRSYNDQLFSAAADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRTTVDRPVIQRHLLSDSTDPFNRSHLTVDMLIPNDELKARIEEFVRCQQMKKHGEGLSLQSNKATIQTTNGEMLID 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00239 1060 CDD RING-Ubox_UBE4A 964 1030 - -
Spst4g00239 1060 FunFam Ubiquitin conjugation factor e4 a 961 1039 - -
Spst4g00239 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 961 1039 IPR013083 -
Spst4g00239 1060 ProSiteProfiles U-box domain profile. 961 1035 IPR003613 GO:0004842|GO:0016567
Spst4g00239 1060 Pfam U-box domain 962 1031 IPR003613 GO:0004842|GO:0016567
Spst4g00239 1060 Coils Coil 540 567 - -
Spst4g00239 1060 PANTHER UBIQUITINATION FACTOR E4 4 1037 IPR045132 GO:0000151|GO:0030433|GO:0034450
Spst4g00239 1060 SUPERFAMILY RING/U-box 954 1029 - -
Spst4g00239 1060 MobiDBLite consensus disorder prediction 445 479 - -
Spst4g00239 1060 SMART Ubox_2 965 1028 IPR003613 GO:0004842|GO:0016567
Spst4g00239 1060 Pfam Ubiquitin elongating factor core 263 945 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00239 1 1060 U-box Gene Family AT5G15400 74.136 0.0 1611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00239 K10597 - gmx:100806175 1826.22