Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00231 ATGGGTTGCATTAGCTCCAAGAATGTGGTTGCCAAAGCTTATTCTCCATCTCCGACAGTGGTTGCTAGTTCCAATGGTTTTCCAACTTCCACCAAGGGTCATTCTGCATTGATGATTTTGGATTCAAAAACAGTTTCAGAGGATGAAAGGAACAACAAGTTTAAGAAAAATAGTTCGAAGAAGAGTAATGGGTCTTTGACCTTAAGGCTTGGGTTGGTTCAAAGGAATGTTGAGGCTGAACAAAATGCTGCTGGTTGGCCTCCTTGGCTCACTACTGTTGCAGCAGAAGCCATTCAAGGATGGATCCCCCTCAAAGCTGATTATTTTCAGAAGTTAGAAAAGATTGGTCAAGGTACATATAGCAGTGTGTTCCGAGCCCGTGAAGTTGAAACTGGAAAGATGTTTGCTTTGAAAAAGGTGCGCTTTGACAATTTTCAACCTGAGAGCATTAGGTTTATGGCAAGAGAAATAACAATCCTTCGTAGGCTTGATCACCCTAACATCATGAAATTGGAGGGCATAATCACTTCTCGCCTATCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTTTCACGTCCTGATATTGTGTTCTCTGAAACACAGATAAAATGTTACATGAGGCAACTTTTAAGTGGACTCGAGCATTGTCATATGCGTGGTATTATGCACAGAGACATCAAAGTGTCAAATATCTTATTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATCACTACAAATAGCAAACATCATTTGACAAGTCGTGTTGTAACTTTGTGGTATCGTCCTCCTGAGCTATTGATGGGATCAACCAACTATGGAGTGTCAGTGGATTTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAAGGGAGAACTGAGGTTGAACAGTTGCACAAAATTTTTAAGTTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGAACAAGCTTCCTCATGCAACAATGTTTAAGCCTCAGATAAATTATGAAAGTTCTCTTCGAGAAAGATGTGCAGATTTTCCTGCATCTGCTATAAACTTACTTGAGACTTTATTATCCATTGACTCAAGTAATAGAGGAACTGCTTCATCTGCCTTAATGTCTGAGTATTTTAGCACCAAGCCATATGCTTGTAGCCCATCAAGCCTGCCAAAGTATCCCCCTAGCAAAGAAATGGATGTAAAATCTCAGGAAGAATCATCCAGAAAAAAGACTGAAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGACAACAAAGACGAATCACTAAAACTTTGCAGGATCCAAACAATTTCGGTAAAGCAACTTCAAAAGAGGACATGCAAAATGGTGGTAGAAATGATGGTAAAGCACATCTTACAAAGGGAAAAGGAGGAGCCATGTACAAAGAACACAGTAAACCTCCATTGGATGTTATGTCTGAGACTTCCCAAGTGATGAATGTTGTTAATGGAAGTGGTTATAGTGTGCCAATACAAGTCCCAGGATCTAATGATGCCTATACATGGGTAAAAAGAAGAAAACAAGATGCATCATCAACTCTCTCAGATGGCTCAAGAAGCAAAATTAGTGCATTGGATCCAAACTTCGCCAAAGGAACATATGATTTAACTACCCAAAGGGTGTCAATGGATTTTGATCCTGCTGAGTTGGTGAATGCTCAGGGTGGCAAAGAACATGATCCACATTGGAAAGAAAATGGCACCCGACATGCAATTCGTAAATCAAGAACAATTGAGGAAAAAAAAATTGTTATGTGGTGGAAACTGGAAAGGAATTGCTTGAGGTATATGCTACTGGTAGGATGTGCCTTGTGTGAACTGACAAGGCTTGGCAAAGGTGCCACGGGTGTGGGCTGGGGCAGCATTTCAATCAGGGGGAATAAGTAA 1956 0.4039 MGCISSKNVVAKAYSPSPTVVASSNGFPTSTKGHSALMILDSKTVSEDERNNKFKKNSSKKSNGSLTLRLGLVQRNVEAEQNAAGWPPWLTTVAAEAIQGWIPLKADYFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFSETQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTITTNSKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKNKLPHATMFKPQINYESSLRERCADFPASAINLLETLLSIDSSNRGTASSALMSEYFSTKPYACSPSSLPKYPPSKEMDVKSQEESSRKKTEGKMREVATSRRQQRRITKTLQDPNNFGKATSKEDMQNGGRNDGKAHLTKGKGGAMYKEHSKPPLDVMSETSQVMNVVNGSGYSVPIQVPGSNDAYTWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTTQRVSMDFDPAELVNAQGGKEHDPHWKENGTRHAIRKSRTIEEKKIVMWWKLERNCLRYMLLVGCALCELTRLGKGATGVGWGSISIRGNK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00231 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Spst4g00231 651 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00231 651 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Spst4g00231 651 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00231 651 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Spst4g00231 651 SUPERFAMILY Protein kinase-like (PK-like) 104 398 IPR011009 -
Spst4g00231 651 CDD STKc_CDK9_like 109 393 - -
Spst4g00231 651 MobiDBLite consensus disorder prediction 403 490 - -
Spst4g00231 651 MobiDBLite consensus disorder prediction 463 490 - -
Spst4g00231 651 PANTHER CELL DIVISION PROTEIN KINASE 107 397 - -
Spst4g00231 651 MobiDBLite consensus disorder prediction 413 445 - -
Spst4g00231 651 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Spst4g00231 651 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00231 651 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Spst4g00231 651 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Spst4g00231 651 MobiDBLite consensus disorder prediction 446 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00231 Spst-Chr4 2590977 2599388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00231 101 491 Core Cell Cycle Gene Families AT5G10270 42.998 1.17e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Spst4g00231 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00231 - - gmx:100790917 963.755