Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00229 ATGGCAAGGAAGAGAAAGGTTGGTGGAGTAGTGGAAGAGAGAAACCTATGTGAGGGAACCATGGCTTGGGATGAGATGATGAAACAAGCTGCAGCACTCGGAGGAGTTCAAAGAGCCAGGAAGAGGTTTGTTGGAGTGAGGCAAAGGCCATCAGGTAGATGGGTGGCTGAGATCAAAGATACCATTCAGAAGATTAGAGTGTGGTTGGGGACTTTTGACACTGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGTTTGCTTCGAGGTGCAAACACAAGGACAAACTTCTGGCCATGTTCTCAACCCTCCACAAGTCCAGCTCTTTCCTCAAAGATCACAAATCTCCTCCTTCAAAGGCTTAAAGAAAGAAACAACAACACTTGTTCCTCTTCCTCCTCCTCCTCCTCCTCCACATCACTTCTCATCAACCACCAACATATGCAACAAGAAGTTGATGTGTATGGTGATGGAACAACACAATTCTCAATTGACCAATTCACTGATTTCCTCAATGACCCTGAAGACTATAGCACAGGCAACAATGAATTCATCAACAACAGTGCACAAATCGACTATATTACTAGTAGTTTCGAATCATGTTTGACTGAAAAAGATGAGGAGGGCATAGAAATGGATGTGCAATACAAAACCAGCATTGTGACACCACAGACTCCAAGTAATGACAGCAATTCAGGAGTGGAGGACAGTGAAGAAGAAGGAACTGATTTGGGTGTCCAAAGCACTAATTTGGATGTCCATGATTTTAGGTTTCTAGACAACATTGCTCCTCCTAGTTACTATTCTCCTTTTGAGATGGCTGGAGAGATGGAGGAGCCTGTGGAGCCAGAGAACTATGGTGGTGATGAGCCTTCAATGCTCAGAGCCGTTATGAAGAGAATGACATATGAGAGGAAGTTCTCAGCCTCTCTCTATGCCTTCAATGGAATACCTGAATGCCTGAAGTTGAAACTTGAATCAGGAAACATGAAGGGAAGAGGACTAACTGATCAATTAACCAGCCTCCAAATGGCTTGTAGCAGAAACAAACTTGAGAAGAATGAGAATGAGGAGGAGAAAGAGTACATGGAAGCAGTGGATAGGAAACAGGAAGAACACCATCAACAAACATCAACTGACATGGATTCTTCAAGTGTTGATGCCGAACTGTTACTGTGGAATTCACTAGATCTTCCTCCAATTTGCTTTGTTAACTTGCTAGAAAACGGTTCATTCAATTAG 1245 0.4353 MARKRKVGGVVEERNLCEGTMAWDEMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQPSTSPALSSKITNLLLQRLKERNNNTCSSSSSSSSSTSLLINHQHMQQEVDVYGDGTTQFSIDQFTDFLNDPEDYSTGNNEFINNSAQIDYITSSFESCLTEKDEEGIEMDVQYKTSIVTPQTPSNDSNSGVEDSEEEGTDLGVQSTNLDVHDFRFLDNIAPPSYYSPFEMAGEMEEPVEPENYGGDEPSMLRAVMKRMTYERKFSASLYAFNGIPECLKLKLESGNMKGRGLTDQLTSLQMACSRNKLEKNENEEEKEYMEAVDRKQEEHHQQTSTDMDSSSVDAELLLWNSLDLPPICFVNLLENGSFN 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00229 414 Coils Coil 349 373 - -
Spst4g00229 414 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Spst4g00229 414 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Spst4g00229 414 MobiDBLite consensus disorder prediction 352 379 - -
Spst4g00229 414 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Spst4g00229 414 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Spst4g00229 414 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Spst4g00229 414 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Spst4g00229 414 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Spst4g00229 414 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Spst4g00229 414 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 309 - -
Spst4g00229 414 MobiDBLite consensus disorder prediction 220 244 - -
Spst4g00229 414 MobiDBLite consensus disorder prediction 352 384 - -
Spst4g00229 414 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00229 Spst-Chr4 2568264 2569508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00229 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 3.12e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g00229 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00229 K09286 - gmx:100786711 692.575