Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00217 ATGTTCACATTCATGAAAATGGCTCATGTTGGCTTTTTCCTTCTGGGGTGTCTCTCCATCTTGATCTCATATGCTAATGGTTATGTCGCCAATGGGGGTTGGACCAATGCACATGCCACATTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGCTATGGAAACTTGTATAGCCAAGGGTATGGAACTAACACAGCAGCACTTAGCACTGCCTTGTTCAACAATGGCTTGAGTTGTGGCTCATGCTACCAAATCAAATGTGCAAATGACCCACAGTGGTGCCGCCCTGGCACCATTGTAGTCACTGCCACTAATTTCTGCCCCCCTGGTGGATGGTGTGACCCTCCTAATCACCATTTTGATCTTTCTCAACCTGTTTTTCAGCAAATTGCTCAATACAAAGCTGGTATTGTTCCTGTAGTGTACAGAAGGGTAAGGTGCAGAAGAAGGGGAGGAATCAGGTTCACCATCAATGGTCATTCATACTTCAACTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGGCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAATTCCTACCTTAATGGACAGAGTCTCTCTTTTTTGGTCACCACAAGTGATGGCCGCAGTCTGCTCTCATACAATGCTGCACCACCAAGTTGGTCTTTTGGACAGACCTACACTGGAAGACAATTCCGCTACTAA 753 0.4675 MFTFMKMAHVGFFLLGCLSILISYANGYVANGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYQIKCANDPQWCRPGTIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSLLSYNAAPPSWSFGQTYTGRQFRY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00217 250 SUPERFAMILY Barwin-like endoglucanases 20 174 IPR036908 -
Spst4g00217 250 PANTHER EXPANSIN-A15 24 248 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Spst4g00217 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Spst4g00217 250 CDD DPBB_EXPA_N 33 141 - -
Spst4g00217 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Spst4g00217 250 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Spst4g00217 250 SMART dpbb_1 69 146 IPR007112 -
Spst4g00217 250 FunFam Expansin 23 152 - -
Spst4g00217 250 FunFam Expansin 156 248 - -
Spst4g00217 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 156 IPR007112 -
Spst4g00217 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Spst4g00217 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Spst4g00217 250 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Spst4g00217 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Spst4g00217 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Spst4g00217 250 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Spst4g00217 250 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Spst4g00217 250 Pfam Lytic transglycolase 69 146 IPR009009 -
Spst4g00217 250 Gene3D - 156 248 IPR036749 -
Spst4g00217 250 Gene3D - 21 152 IPR036908 -
Spst4g00217 250 Pfam Expansin C-terminal domain 157 234 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00217 Spst-Chr4 2419755 2421195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00217 6 249 Expansin Gene Family AT2G03090 76.587 7.25e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00217 K20628 - gmx:100799370 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00217 4 2419755 2421195 Spst1g01380 1 17324139 17324780 PCT