Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00212 ATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGGGCGACTGGTGCTGGTTACTGGAAGGCCACAGGCAAAGACAAAGAGATTTACAAGGCAAAGACACTTATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAGTGGTGAAAAAACAAACTGGGTCATGCATGAATACAGATTAGAAAATGATCATTCCATGCACAATCCACACAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTTCAGAAGACTAACTGTGACAAGAAAATGCAGATTTCTGGTTTGGTGAGGTTCTCCTCCTTTGGAAAGGACATGCCTTCATTGATGGATTCTTCTCCATACAACACCAGTGAAGCAAAGCCTGTTTTGGGGGAGTCATCACACTTCTCTGATCCAAACCAAAGTGAGGACCAAAGGTCACATGATGAGAACATAGTTGATAGCCTTGAAACTCTCATGATGCCATCATCATCTTCATATTCTTCAAACCCCTTTGATGTTTCCCCTGCCTCATGGAGTTTTGCCAAATCTGCTCCGGCTGTGCCCCACCAATCCCCCCAAGCTGGGAACTCACACTACTCAGACTATTTCATGGCTCAAGAACAGTCCATGTTGGGGATGTTGATTGAAAACCATGGATCAAGTACTAGCCTAAGAACTGAGACAGCACAGGATAAAGACTTTGATGCTGACATGTCCTCTCTGATATACAACAACGAAATGCTTCAAAGATCATTTGGGAACCAGGAATATTCATCACCTTCTGTAGGACATGTGTATACTAGTGACCTATGGGGATTCTAA 864 0.4317 MAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDKEIYKAKTLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLENDHSMHNPHKKAMNDWAICRIFQKTNCDKKMQISGLVRFSSFGKDMPSLMDSSPYNTSEAKPVLGESSHFSDPNQSEDQRSHDENIVDSLETLMMPSSSSYSSNPFDVSPASWSFAKSAPAVPHQSPQAGNSHYSDYFMAQEQSMLGMLIENHGSSTSLRTETAQDKDFDADMSSLIYNNEMLQRSFGNQEYSSPSVGHVYTSDLWGF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00212 287 MobiDBLite consensus disorder prediction 129 151 - -
Spst4g00212 287 Gene3D NAC domain 1 107 IPR036093 GO:0003677|GO:0006355
Spst4g00212 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 196 - -
Spst4g00212 287 Pfam No apical meristem (NAM) protein 3 78 IPR003441 GO:0003677|GO:0006355
Spst4g00212 287 SUPERFAMILY NAC domain 3 103 IPR036093 GO:0003677|GO:0006355
Spst4g00212 287 ProSiteProfiles NAC domain profile. 1 103 IPR003441 GO:0003677|GO:0006355
Spst4g00212 287 MobiDBLite consensus disorder prediction 129 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00212 Spst-Chr4 2358799 2359866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00212 1 287 NAC Transcription Factor Family AT5G61430 46.309 3.67e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g00212 NAM 7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00212 - - gmx:100781383 476.092