Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00210 ATGGGACGATCACCATGCTGCGATAAGGTAGGTTTGAAGAAAGGACCATGGACTCCAGAAGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGTCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAGAGTTGCAGACTAAGATGGACCAATTATCTTAGGCCTGATATTAAGAGAGGAAAGTTCAGTTTGCAAGAGGAGCAAACCATCATTCAACTACATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAAATCAAGAACTACTGGAACACGCATCTTAAGAAAAGGTTGACCAAAATGGGAATTGACCCTGTCACACACAAGCCAAAAAATGATGCACTTCTCTCTAGTGATGGCCAATCCAAAACCGCTGCAAATCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTTGAAGCTGAAGCAAGACTAGTGAGAGAATCAAAACTACGTTCACATTCACTTCAGCAACAACTTGGAAGTTCTTCTACATTTGCATCTTCATCTTCTGCATCCACTTCAGCTTCAGTTCTCAACAATAACAATAATAAGCCAGAAGCTCAGCCACCGCCGCCTCCGCCGCCGTCGCGTTCCTCCCTTGATGTTCTCAAGCCTTGGAACAATGGAGGGTGGTTAAAATCAATTGAAGGGAGTGGTGCTATTGCAAGCACTGTTGGGGTGAGTGGTGACCTTGAGTCTCCCACTTCTACGCTATCTTTCTCCGAGAATGCACCACCAATAATGAGTGCAATTGGAGGAGAAAATAACAACAACAACGATAATGCAATGCCTATGATTGAGTTTGTGGGAAGTTCGGGTAATTCATCTTCTCTTGTGAAAGAAGAGGGTGAACAAGAGTGGAAAGGTTATGACAGTTCTATCACCACTTTTAGTTCTAATTTGCATGAGTTCACAATGTCCATGGAGGGCACGTGGGCCCATGAGTCCCTCAGAACTAGTGGCTCACATGATGACATTGTAGAAGAAGGCTTCACCAATCTTCTCCTTAAGACAAATTCGGAAGATCCAAGTTTGTCGTCGGAAGGTGGAGGAGAGTCTAACAACGGTGACGGTGATGGTGGTGGTGGCAGTCATAGCGATTTTTACGAAGATAACAATAACTATTGGAACAGCATCCTCAATTTAGTGAATTCATCCCCTTCTGATTCTCCTATGTTCTGA 1239 0.4512 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQLGSSSTFASSSSASTSASVLNNNNNKPEAQPPPPPPPSRSSLDVLKPWNNGGWLKSIEGSGAIASTVGVSGDLESPTSTLSFSENAPPIMSAIGGENNNNNDNAMPMIEFVGSSGNSSSLVKEEGEQEWKGYDSSITTFSSNLHEFTMSMEGTWAHESLRTSGSHDDIVEEGFTNLLLKTNSEDPSLSSEGGGESNNGDGDGGGGSHSDFYEDNNNYWNSILNLVNSSPSDSPMF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00210 412 CDD SANT 69 112 IPR001005 -
Spst4g00210 412 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Spst4g00210 412 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst4g00210 412 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst4g00210 412 MobiDBLite consensus disorder prediction 132 147 - -
Spst4g00210 412 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst4g00210 412 MobiDBLite consensus disorder prediction 174 222 - -
Spst4g00210 412 CDD SANT 16 61 IPR001005 -
Spst4g00210 412 Gene3D - 13 66 - -
Spst4g00210 412 FunFam MYB transcription factor 69 116 - -
Spst4g00210 412 MobiDBLite consensus disorder prediction 358 388 - -
Spst4g00210 412 SMART sant 66 114 IPR001005 -
Spst4g00210 412 SMART sant 13 63 IPR001005 -
Spst4g00210 412 MobiDBLite consensus disorder prediction 174 203 - -
Spst4g00210 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst4g00210 412 MobiDBLite consensus disorder prediction 204 218 - -
Spst4g00210 412 MobiDBLite consensus disorder prediction 119 147 - -
Spst4g00210 412 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst4g00210 412 Gene3D - 69 116 - -
Spst4g00210 412 MobiDBLite consensus disorder prediction 358 372 - -
Spst4g00210 412 MobiDBLite consensus disorder prediction 248 277 - -
Spst4g00210 412 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst4g00210 412 FunFam MYB-related transcription factor 13 66 - -
Spst4g00210 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00210 Spst-Chr4 2345237 2347523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00210 1 412 MYB Transcription Factor Family AT3G01140 54.916 5.31e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00210 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00210 K09422 - gmx:100787446 650.588