Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00195 ATGGAGATAATAACACCAACGCCACCAACAACAGCCGTCACTACGACAAACACAGCCGCGAAATCGCCGGAACCCGACATAGAGACTCCGACCCGGATCCACCAAGCCGTCGGAAACCCGAATCCGAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACCACCGCGTCACCGCCGTGGTTTACAAGGAATGCTTGAAGAACCACGTGGCGAGCTTAGGTGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCTCCGGCGGCCACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCCGAGGAGCCGCCAATTTCCCCGGCAACGCATCATGTTCTGGAGTACCAGCCCCATCACCGTCACCACCCTCCGCCGCCGGTTCCTTCACACCGGAGTCCTAACTCCGCCTCCCCGCCGCCGATCTCCTCCTACCCGTCGGCACCCCACATGCTCCTCGCCCTCGCCGGAGGCAGCGGCCTCTCCGTCGCGCCGGAAAACACAGCCGCGCCGGCTCAGGCTCACCACTCCCGGAAGCGCTTCCGCACGAAATTCACCCAGGAGCAGAAAGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAGACATGGTTATGGAGTTTTGCAACGAGGTTGGTGTCGACAGAGGAGTTCTCAAAGTGTGGATGCACAACAACAAGAATACTTTCGCCAAAAAAGACAACCTTAATGGTAGTGCTGGTCTCGTCAGTGCCAACGGGATTAACCATGTTCCCACAGTAATCAGCGCTACCGTCAGAAGCAACGTTGATGTCCTCGAACATGAACGCGGCGGAATCAACGGTAACAGCAACGACGACCACAACCACAACCCCGGTTCTTCTCACGATGCGAACGAGTACGAGAATGATAGTGGAACAAACGGTGGTGGAACAAATGGGTCTTCTTCTTCTTCTTGA 1017 0.5851 MEIITPTPPTTAVTTTNTAAKSPEPDIETPTRIHQAVGNPNPSPKPVSFSNGVLKRHHANHRVTAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPVPSHRSPNSASPPPISSYPSAPHMLLALAGGSGLSVAPENTAAPAQAHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDEDMVMEFCNEVGVDRGVLKVWMHNNKNTFAKKDNLNGSAGLVSANGINHVPTVISATVRSNVDVLEHERGGINGNSNDDHNHNPGSSHDANEYENDSGTNGGGTNGSSSSS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00195 338 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
Spst4g00195 338 MobiDBLite consensus disorder prediction 147 164 - -
Spst4g00195 338 MobiDBLite consensus disorder prediction 1 27 - -
Spst4g00195 338 MobiDBLite consensus disorder prediction 7 24 - -
Spst4g00195 338 MobiDBLite consensus disorder prediction 136 164 - -
Spst4g00195 338 Gene3D - 183 258 - -
Spst4g00195 338 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 119 IPR006456 -
Spst4g00195 338 FunFam Zinc-finger homeodomain protein 2 185 258 - -
Spst4g00195 338 SUPERFAMILY Homeodomain-like 187 258 IPR009057 -
Spst4g00195 338 MobiDBLite consensus disorder prediction 317 338 - -
Spst4g00195 338 MobiDBLite consensus disorder prediction 295 338 - -
Spst4g00195 338 Pfam ZF-HD protein dimerisation region 66 120 IPR006456 -
Spst4g00195 338 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
Spst4g00195 338 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00195 Spst-Chr4 2178530 2179546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00195 1 272 ZF-HD Transcription Factor Family AT5G15210 49.640 7.73e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst4g00195 ZF-HD_dimer 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00195 - - gmx:100814730 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00195 4 2178530 2179546 Spst1g01323 1 16229873 16230844 PCT