Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00194 ATGAACATGCATGCAAACAAAGGAATCAATGTGAGTTTTTGTCGTACAGTAGTACAACTGGTGAAATCAAACAACATGAGGAAGCGCCAAGTGGTTGTGAGAAGAGAGGAGCCCCAGAGAAGTGTTAGGAGTGTGAAGTATGGTGAGTGCCAGAAGAATCATGCAGCAAATGTTGGAGGGTATGCTGTTGATGGTTGCAGAGAGTTCATGGCAAGTGGTGGAGAAGGGACAAGTGCTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAGAGACAGGTTGAAACTGAAGTAGTGTGTGAGTGCTCCTCACCTCCCTCCAATGGCACATGA 342 0.4766 MNMHANKGINVSFCRTVVQLVKSNNMRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTSAALTCAACGCHRNFHKRQVETEVVCECSSPPSNGT 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00194 113 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 47 96 IPR006456 -
Spst4g00194 113 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 100 - -
Spst4g00194 113 Pfam ZF-HD protein dimerisation region 45 97 IPR006456 -
Spst4g00194 113 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 46 96 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00194 Spst-Chr4 2150969 2152765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00194 26 112 Zinc finger-homeobox gene family AT3G28917 69.697 9.37e-43 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst4g00194 ZF-HD_dimer 9.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00194 - - aprc:113868039 171.014