Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00193 ATGGAGTGTGTTATTGAGATTAGACATGTGCATGAAGAAGTTGAAGTGGTGTCTGGTATGATGTGTTTGGAGAAAGAGTTCACAGTTGGTCACTTGATTGACCAACACCAACTTGAAGTAAGAGAAAAAAGGTGCATACAAGGGAAGATGGGAAGACCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGATATTATTTTGGTGTCTTACATACAGGAGCATGGTCCTGGCAATTGGAAGGCTGTTCCTGCTAAAACTGGGTTGTCGAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACTGAAGAAGAAGAGAAGATGATAATCCATCTTCAAGCACTTCTAGGGAACAGATGGGCTGCCATAGCTGCATACCTGCCACAAAGAACAGATAATGACATAAAAAACTATTGGAACACCTATTTGAAAAAAAAGCTGAACAAATTGGAAGCAAGTGGTTCTGAAGGAAGCTTGGGACATGTTGGGGTTTCAGTTTCTCAGCCAATGTCTAGAGGTCAGTGGGAAAGAAGGCTTCAAACAGATATCCAGATGGCCAAGAAGGCTCTCAGTGAAGCTCTCTCACCAAACAAGGCATCATCCACCTTGTTAGCTGAGTCAAATTCAAAGCTCTCCAATCATAACACTGGCTCTTTCTATAACTCCACCAAACCAACACAATCTATATGTTATGCCTCAAGTGCTGACAACATAGCTCGTTTGTTGAAGGGGTGGATGAAAAACACACCAAAAGCTTCACGTTCTACCACTCAAAACTCCTTCAACAACTTGGCTGGTGCTGGAGCTGACACTGCTTCCAGCGAAGGAACAACAAAGGGAAGCACACACAATGCTGAATTGTCTGAGACTTTTGAGACGTTGTTCGGTTATGAGTCTTTGGAGTCTTCAAATTCCGAGTTTTCACCATCTCTTTCTCCTGAGGGAACTCTTTTTCAAGATGAGAGCAAGCCAGTTATTGCTGGAATAGACATACCTTTCTCTCTGCTTGAGAAATGGCTTCTGGATGATGCAGGTTGCCAAGATAAACTTAGTTTCTAG 1113 0.4277 MECVIEIRHVHEEVEVVSGMMCLEKEFTVGHLIDQHQLEVREKRCIQGKMGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPAKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEEEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEASGSEGSLGHVGVSVSQPMSRGQWERRLQTDIQMAKKALSEALSPNKASSTLLAESNSKLSNHNTGSFYNSTKPTQSICYASSADNIARLLKGWMKNTPKASRSTTQNSFNNLAGAGADTASSEGTTKGSTHNAELSETFETLFGYESLESSNSEFSPSLSPEGTLFQDESKPVIAGIDIPFSLLEKWLLDDAGCQDKLSF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00193 370 MobiDBLite consensus disorder prediction 267 301 - -
Spst4g00193 370 CDD SANT 118 161 IPR001005 -
Spst4g00193 370 SUPERFAMILY Homeodomain-like 60 157 IPR009057 -
Spst4g00193 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 110 IPR017930 -
Spst4g00193 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 165 IPR017930 -
Spst4g00193 370 Gene3D - 62 115 - -
Spst4g00193 370 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Spst4g00193 370 ProSiteProfiles Myb-like domain profile. 58 110 IPR001005 -
Spst4g00193 370 SMART sant 115 163 IPR001005 -
Spst4g00193 370 SMART sant 62 112 IPR001005 -
Spst4g00193 370 Pfam Myb-like DNA-binding domain 116 161 IPR001005 -
Spst4g00193 370 Pfam Myb-like DNA-binding domain 63 110 IPR001005 -
Spst4g00193 370 FunFam MYB-related transcription factor 62 115 - -
Spst4g00193 370 CDD SANT 65 110 IPR001005 -
Spst4g00193 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 50 288 - -
Spst4g00193 370 Gene3D - 117 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00193 Spst-Chr4 2122853 2128686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00193 50 361 MYB Transcription Factor Family AT5G62470 52.273 1.19e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00193 Myb_DNA-binding 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00193 K09422 - gmx:780542 503.442