Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00191 ATGGAGGAGAGGAATGAGATGGAAAAGATTGATGATGTGATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTCTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTTCCTATTGAGCTGATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAAGAGCTGGCAGGTACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGGAACAGTGCCCGTCCAAATAGAGTCACAAGAGCTGGATTTTGGAAGGCCACTGGAACTGACAGGCCTATATATTCCTCTGAAGGGAAGTGCATTGGTCTGAAGAAGTCTCTTGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGCTGCCTTGCATATCAGACTCAGCCCCTCCCAAAAAACTCCTTGACAAAAGCCTCCCTCCAAGTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTTTCCATGGCACAGAAAGCTTTATCTCAACCTTGGATCTCTCAGTTACAAGGAAACATAGTACCTGACATGTTCACACAGGATGCAACAAACCATCACCTAGGATCACCAGCCATTCAATTTTGTGGTGACAAGCAAGAGTTATACCAAGTCTCCAATAATGACATCAATACCAACTTCTCAGCTTCAGATATTCCTCCCACTTACAAACCCATCAACAACAGCACAGTTTCCAAGCCATCACCACAAATTCCTGTTTCTGATGGAGACCTTGCTGACAACTTCATATTCTACACAGGAGACACCAAGGGAACACTTGATGCCAGTTCCATGCTTCCTCCCAACCCTGACTACATAACATTTGAAGAGCCAAACCAACAACAGTACAGTGGCTTCTCAATCAATCTACCTCATTACATGCAACAAAACATGAGCACGGAAGCAGTAACAAAAGAACATCAAGATTGGGAAACAATTGGGAGAACCACTGGATTTCCTTTTACTTTGCTTCCCCCATATGATGCATGGAAGTCTTCTTCTGTGGCATGGGACTCACCTCCTTGCCCCAGTGACATGTCCACTACCTATTCCACCAATAAATGCTACACTTGA 1134 0.4365 MEERNEMEKIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKELAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSAPPKKLLDKSLPPSDSWAICRIFKKTNSLSMAQKALSQPWISQLQGNIVPDMFTQDATNHHLGSPAIQFCGDKQELYQVSNNDINTNFSASDIPPTYKPINNSTVSKPSPQIPVSDGDLADNFIFYTGDTKGTLDASSMLPPNPDYITFEEPNQQQYSGFSINLPHYMQQNMSTEAVTKEHQDWETIGRTTGFPFTLLPPYDAWKSSSVAWDSPPCPSDMSTTYSTNKCYT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00191 377 FunFam NAC domain-containing protein 35 22 174 - -
Spst4g00191 377 SUPERFAMILY NAC domain 11 171 IPR036093 GO:0003677|GO:0006355
Spst4g00191 377 Gene3D NAC domain 22 176 IPR036093 GO:0003677|GO:0006355
Spst4g00191 377 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 248 - -
Spst4g00191 377 ProSiteProfiles NAC domain profile. 13 171 IPR003441 GO:0003677|GO:0006355
Spst4g00191 377 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00191 Spst-Chr4 2105825 2107652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00191 2 187 NAC Transcription Factor Family AT5G39820 69.652 1.14e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g00191 NAM 5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00191 - - gmx:100777630 637.491