Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00185 ATGGCTGAAGCTGCGGAGCCTAAAGCATTGCCTGAGGCAGAGAAGAAGAAGGAGCAGACTTTGCCCTTTTACAAGCTCTTCTCGTTTGCTGACAAGTGTGATTGGATGCTCATGATCTCTGGCAGCTTGGGAGCCATTGTTCATGGCTCATCAATGCCAGTTTTCTTCCTCCTCTTTGGTGAAATGGTTAATGGCTTTGGCAAAAACCAAATGGACTTGAAGAAAATGACAGAAGAAGTATCAAAGTATGCTCTCTATTTCGTGTACCTTGGCCTTGTCGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGGCAAGTGAGCACACTGAGAAAGAAGTACTTGGAAGCAGTGCTTAAACAGGACGTTGGTTTCTTTGACACGGATGCAAGAACAGGAGATATTGTTTTCAGTGTCTCCACAGATACACTACTAGTTCAAGATGCTATAAGCGAGAAGGTGGGGAACTTCATACACTATCTATCAACGTTTCTGGCGGGTCTAGTGGTTGGTTTCGTGTCAGCATGGAGGCTTGCACTTCTGAGTGTTGCAGTGATTCCTGGGATTGCTTTTGCTGGTGGATTGTATGCTTACACACTCACTGGCCTCACATCAAAGAGTCGTGAATCTTATGCAAATGCAGGAATAATAGCTGAGCAGTACATGGAGCGCATGCTCTTCTTTCATATGAATTTGCGCCTTGTTTCAAGTTCAGTGGTTGTTTTAGCGTGTGATAATGATGTCATGTCGTGTGGAGCACTCATGAAAGCCATTGCTCAAGTTAGAACTGTTTACTCTTATGTCGGTGAGAGCAAGGCACTGAATTCTTATTCTGATGCAATACAAAACACTCTAAAACTTGGATACAAGGCAGGAATGGCCAAAGGTTTAGGCCTAGGATGCACATATGGAATAGCATGCATGTCTTGGGCACTGGTTTTCTGGTATGCTGGAGTTTTCATCAGGAATGGACAAACAGATGGAGGCAAGGCATTCACGGCTATTTTCTCAGCCATTGTTGGTGGCATGAGTTTGGGACAGTCCTTTTCCAATTTAGGTGCTTTCAGCAAAGGCAAAGCAGCAGGATACAAATTGATGGAGATCATCAAACAGAAACCCACCATAGTGGAAGATCCATCAGAAGGGAAGTGCCTAGCTGAGGTTAATGGCAACATTGAATTTAAGGATGTTACTTTCAGCTACCCTTCGAGGCCGGATGTGTATATCTTTCGCAGTTTCTCAATCTTTTTTCCTGCTGGAAAAACTGTTGCGGTTGTTGGTGGCAGTGGATCTGGAAAGAGCACAGTTGTGTCCTTGATAGAAAGGTTCTATGATCCAAATGAAGCAGGTCAGGTTCTGCTGGATAACGTGGACATCAAGACTCTACAACTAAAATGGTTACGTGATCAAATTGGGTTGGTGAATCAAGAACCTGCTCTCTTTGCAACTACCATTCTTGAGAATATACTCTATGGAAAACCTGATGCAACAATGGCTGAAGTGGAAGCTGCTACTTCTGCTGCAAATGCTCATAGTTTTATCACCTTGCTTCCTAATGGCTATAACACTCAGGTAGGAGAGCGAGGAGTTCAATTGTCTGGGGGCCAAAAGCAGAGAATTGCAATTGCCAGAGCCATGTTGAAGAACCCAAAGATCCTTCTATTAGATGAAGCAACTAGTGCTCTTGATGCAGGGTCTGAAAGCATAGTTCAAGAGGCACTAGACAGGCTCATGGTTGGAAGAACAACTGTGGTTGTTGCACATCGGCTGTCAACCATAAGGAATGTTGATACCATTGCAGTTATACAACAAGGACAAGTTGTTGAGACAGGCACACATGAAGAACTCATTGCCAAGGCAGGCACATATGCTTCACTCATTCGGTTCCAAGAAATGGTTGGAAATAGAGACTTCTCTAACCCATCAACTCGTCGGACTCGGTCATCACGATTGAGCCATTCATTGTCAACGAAGTCCTTGAGCCTCAGGTCTGGAAGCCTGAGGAACTTGAGCTACCAGTATAGCACTGGCGCCGATGGTCGTATTGAGATGATATCAAATGCTGAAACAGATAAGAAAAATCCTGCTCCAGATGGATATTTCTTCAGGTTGCTCAAGTTGAATGCTCCTGAGTGGCCTTACTCAATCATGGGAGCTGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCAACTTTTGCAATTGTTATGAGCAACATGATTGAGGTCTTTTACTTTAGAAATTATGCTTCCATGGAGAGGAAGACTAAGGAATATGTCTTCATTTACATTGGTGCCGGTCTCTATGCAGTTGGTGCATACTTGATACAACATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGCCTTGCCACTGATGCAGCTGATGTCAAGTCTGCAATTGCTGAGAGGATATCAGTGATTTTGCAGAACATGACATCTCTCCTTACTTCTTTTATAGTTGCTTTCATAGTGGAATGGAGGGTTTCCTTGCTCATCTTGGCAACCTTCCCTCTCCTTGTGCTAGCCAATTTTGCTCAGATATATATTGTGGTGGGGCCAGAGCTCCCCACCCGTGATCGGTTCCAGTCTTTTTCAGGTCCTAGACATGTGACTTGGTTTACGTTGGACTTTATGCTGCTGTTTGATTCAGTGCTAATGTTTCTCTGTGTATTGATTCTGCAGCAACTATCTCTGAAAGGGTTTGCTGGAGACACGGCCAAGGCTCATGCAAAGACGAGTATGATAGCAGGAGAGGGAGTGAGCAACATCAGAACAGTTGCAGCATTCAATGCTCAAACCAAGATGTTATCTGTGTTCTGCAATGAGCTTCGTGTGCCTCAGCGCCAGAGTCTACGCCGGAGCCTCACATCCGGTTTCTTGTTCGGCCTCTCCCAGCTTGCCCTCTATGCCTCGGAGGCTCTCATTCTATGGTATGGTGCACACTTGGTGAGCAAAGGTGCTTCAACCTTCTCGAAGGTCATCAAGGTGTTTGTGGTTCTTGTGATCACCGCGAATTCAGTGGCAGAAACCGTCAGCCTCGCGCCGGAGATAATCCGCGGCGGTGAGGCCGTTGGTTCAGTGTTCTCAATCCTTGATCGCTCTACAAGGATTGACCCTGATGATCCTGATGCTGAGCCAGTGGAATCGCTTCGCGGGGAGATTGAGCTGAGGCATGTTGATTTTGCATACCCTTCAAGGCCTGATGTGATGGTGTTCAAGGATTTGAATCTGAGGATCCGGGCAGGGCAGAGCCAAGCACTTGTGGGGGCAAGTGGATCAGGAAAGAGTTCTGTGATTGCATTAATAGAGAGATTCTATGACCCTATTGCTGGGAAAGTAATGGTGGATGGGAAGGACATAAGGAAGTTGAACCTGAAGTCTTTGAGGCTGAAGATAGGGTTGGTGCAGCAAGAGCCAGCACTTTTTGCAGCAAGCATTTTTGAGAACATTGCATATGGGAAAGATGGTGCAACTGAGGCTGAGGTTATAGAGGCTGCACGTGCAGCCAATGTGCATGGATTTGTGAGTGGTTTGCCTGAAGGTTACAAGACACCTGTTGGTGAGAGAGGAGTGCAACTTTCTGGAGGGCAGAAGCAAAGGATTGCTATTGCTAGGGCAGTGCTTAAGGACCCTACAATTCTTCTGCTGGATGAGGCCACGAGTGCCCTAGATGCTGAGTCTGAGTGTGTGCTACAAGAAGCCTTGGAGAGGCTAATGAGGGGTCGCACCACAGTGCTTGTGGCTCATCGTTTGTCAACCATTAGAGGAGTGGATTGCATCGGAGTTGTTCAAGATGGACGCATTGTGGAGCAAGATGTAGATATGTGGGATATGATGAGAGGTGTGGATCCAACAGCCATATCTTTGGTGTTAAAGCCTCATAAATATTTGATTGGTAAAGGACAAATGGCTTTCATGGATATTCTATTGTGCTGCATAAGTGTCTGGTTAAAGCCTGTTATTTGTTGGGCTAACGTGAGCTTTGGAAATTTGGGCTTGGGAGTGTCACTAATTACTGTCGAGATTTATGCAGTGATTGTGGATGACCCAAGGAAAGGAAGCATGGAACGAAAAGCATCGAATCGACGATATTTCATTGGGGAAGGAAGAATCACAAAGCTTTTGGTCAACGATGATAATGATTTTTATGGAGTTGAAGAGTAA 4278 0.4542 MAEAAEPKALPEAEKKKEQTLPFYKLFSFADKCDWMLMISGSLGAIVHGSSMPVFFLLFGEMVNGFGKNQMDLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQYMERMLFFHMNLRLVSSSVVVLACDNDVMSCGALMKAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPSEGKCLAEVNGNIEFKDVTFSYPSRPDVYIFRSFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEAGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFRNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQIYIVVGPELPTRDRFQSFSGPRHVTWFTLDFMLLFDSVLMFLCVLILQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQTKMLSVFCNELRVPQRQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSKGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDAEPVESLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKDGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQDVDMWDMMRGVDPTAISLVLKPHKYLIGKGQMAFMDILLCCISVWLKPVICWANVSFGNLGLGVSLITVEIYAVIVDDPRKGSMERKASNRRYFIGEGRITKLLVNDDNDFYGVEE 1425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00185 1425 FunFam ABC transporter B family member 19 1082 1319 - -
Spst4g00185 1425 FunFam ABC transporter B family member 19 388 637 - -
Spst4g00185 1425 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1094 1328 IPR003439 GO:0005524
Spst4g00185 1425 PANTHER ABC TRANSPORTER B FAMILY 4 734 IPR039421 -
Spst4g00185 1425 CDD ABC_MTABC3_MDL1_MDL2 398 636 - -
Spst4g00185 1425 Gene3D - 1082 1310 IPR027417 -
Spst4g00185 1425 Gene3D - 388 637 IPR027417 -
Spst4g00185 1425 SUPERFAMILY ABC transporter transmembrane region 703 884 IPR036640 GO:0005524|GO:0016020
Spst4g00185 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 636 IPR027417 -
Spst4g00185 1425 SUPERFAMILY ABC transporter transmembrane region 26 361 IPR036640 GO:0005524|GO:0016020
Spst4g00185 1425 SMART AAA_5 1119 1305 IPR003593 GO:0016887
Spst4g00185 1425 SMART AAA_5 425 612 IPR003593 GO:0016887
Spst4g00185 1425 Gene3D ABC transporter type 1, transmembrane domain 25 229 IPR036640 GO:0005524|GO:0016020
Spst4g00185 1425 Gene3D ABC transporter type 1, transmembrane domain 914 1081 IPR036640 GO:0005524|GO:0016020
Spst4g00185 1425 Gene3D ABC transporter type 1, transmembrane domain 701 892 IPR036640 GO:0005524|GO:0016020
Spst4g00185 1425 Gene3D ABC transporter type 1, transmembrane domain 262 650 IPR036640 GO:0005524|GO:0016020
Spst4g00185 1425 ProSitePatterns ABC transporters family signature. 538 552 IPR017871 GO:0005524|GO:0016887
Spst4g00185 1425 SUPERFAMILY ABC transporter transmembrane region 922 1071 IPR036640 GO:0005524|GO:0016020
Spst4g00185 1425 CDD ABC_MTABC3_MDL1_MDL2 1092 1309 - -
Spst4g00185 1425 Pfam ABC transporter transmembrane region 915 1041 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00185 1425 Pfam ABC transporter transmembrane region 722 882 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00185 1425 Pfam ABC transporter transmembrane region 43 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00185 1425 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 371 - -
Spst4g00185 1425 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 722 1057 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00185 1425 Pfam ABC transporter 420 566 IPR003439 GO:0005524
Spst4g00185 1425 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 363 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00185 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1081 1309 IPR027417 -
Spst4g00185 1425 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 398 635 IPR003439 GO:0005524
Spst4g00185 1425 CDD ABC_6TM_Pgp_ABCB1_D2_like 711 1075 - -
Spst4g00185 1425 ProSitePatterns ABC transporters family signature. 1231 1245 IPR017871 GO:0005524|GO:0016887
Spst4g00185 1425 Pfam ABC transporter 1111 1259 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00185 Spst-Chr4 1987171 2011687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00185 17 636 Calmodulin-binding Proteins AT2G36910 36.859 1.11e-106 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00185 K05658 - gmx:100797124 2211.42